CAZyme3D

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Entry ID

Information for CAZyme ID: UXI18147.1

Basic Information

GenBank IDUXI18147.1
FamilyAA3_2
Sequence Length608
UniProt IDA0A834RDV0(100,100)Download
Average pLDDT?93.58
CAZy50 ID51357
CAZy50 RepYes, UXI18147.1
Structure ClusterSC_AA3_clus123
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID52283
KingdomEukaryota
PhylumArthropoda
ClassArachnida
OrderSarcoptiformes
FamilySarcoptidae
GenusSarcoptes
SpeciesSarcoptes scabiei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSLTYQLLT  VSMVILQRQM  IHNNSANREQ  WNQSYDYIVV  GSGTAGSIVA  ARLSENPSKT60
VLLLEAGGPA  SVITDMPVES  WNIELGDFDW  GYYTTPQANA  GFGFRNNRIV  YPRGKVIGGS120
HTTNFAIYNR  GSRYDYDNWA  NHYGLPEWSY  ENVLPFFLRT  ENNTNQEYVR  DSPNHHSTSG180
HIEVSSAPRP  DPILLKYIEG  WNRQGVQYTD  FNGPRQFGTT  IIQQTIYTTN  HTRASTSNAF240
VLPALNRDNL  HLVAHAHVTR  VLLRRNDLQQ  LEAYGVEFVR  KNQTYRVLAN  REVVMSAGAV300
NTPQILMLSG  IGPRDHLTEL  GIDVQADLPV  GLNLQDHILI  PVHYLANNES  LIDWSRKIDN360
SLTVTNLYDY  FMRNTGPISQ  LPVVLTYHST  RVNDNPEWPD  GIIATLTDQI  PEDLSLLTSF420
NANPEEWTEF  YRPLIKDRRH  FYIFYAMYRP  RSRGTIRLQS  RNPFDAPLID  PNFYGDMHDL480
AIAVDTMSAG  MEMTEQPFFR  QYARIYERPI  PGCTPCPDRP  YYRCYTYLAC  IAQTVTATSY540
HPTCTCRMGN  SSEPNAVVDS  HLRVRGVNNL  RVVDASIMPK  IINANTNAAT  MMIGERGADF600
ILNDSLSK608

Predicted 3D structure by AlphaFold2 with pLDDT = 93.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLSLTYQLLT  VSMVILQRQM  IHNNSANREQ  WNQSYDYIVV  GSGTAGSIVA  ARLSENPSKT60
VLLLEAGGPA  SVITDMPVES  WNIELGDFDW  GYYTTPQANA  GFGFRNNRIV  YPRGKVIGGS120
HTTNFAIYNR  GSRYDYDNWA  NHYGLPEWSY  ENVLPFFLRT  ENNTNQEYVR  DSPNHHSTSG180
HIEVSSAPRP  DPILLKYIEG  WNRQGVQYTD  FNGPRQFGTT  IIQQTIYTTN  HTRASTSNAF240
VLPALNRDNL  HLVAHAHVTR  VLLRRNDLQQ  LEAYGVEFVR  KNQTYRVLAN  REVVMSAGAV300
NTPQILMLSG  IGPRDHLTEL  GIDVQADLPV  GLNLQDHILI  PVHYLANNES  LIDWSRKIDN360
SLTVTNLYDY  FMRNTGPISQ  LPVVLTYHST  RVNDNPEWPD  GIIATLTDQI  PEDLSLLTSF420
NANPEEWTEF  YRPLIKDRRH  FYIFYAMYRP  RSRGTIRLQS  RNPFDAPLID  PNFYGDMHDL480
AIAVDTMSAG  MEMTEQPFFR  QYARIYERPI  PGCTPCPDRP  YYRCYTYLAC  IAQTVTATSY540
HPTCTCRMGN  SSEPNAVVDS  HLRVRGVNNL  RVVDASIMPK  IINANTNAAT  MMIGERGADF600
ILNDSLSK608

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(33-604)

MLSLTYQLLT  VSMVILQRQM  IHNNSANREQ  WNQSYDYIVV  GSGTAGSIVA  ARLSENPSKT60
VLLLEAGGPA  SVITDMPVES  WNIELGDFDW  GYYTTPQANA  GFGFRNNRIV  YPRGKVIGGS120
HTTNFAIYNR  GSRYDYDNWA  NHYGLPEWSY  ENVLPFFLRT  ENNTNQEYVR  DSPNHHSTSG180
HIEVSSAPRP  DPILLKYIEG  WNRQGVQYTD  FNGPRQFGTT  IIQQTIYTTN  HTRASTSNAF240
VLPALNRDNL  HLVAHAHVTR  VLLRRNDLQQ  LEAYGVEFVR  KNQTYRVLAN  REVVMSAGAV300
NTPQILMLSG  IGPRDHLTEL  GIDVQADLPV  GLNLQDHILI  PVHYLANNES  LIDWSRKIDN360
SLTVTNLYDY  FMRNTGPISQ  LPVVLTYHST  RVNDNPEWPD  GIIATLTDQI  PEDLSLLTSF420
NANPEEWTEF  YRPLIKDRRH  FYIFYAMYRP  RSRGTIRLQS  RNPFDAPLID  PNFYGDMHDL480
AIAVDTMSAG  MEMTEQPFFR  QYARIYERPI  PGCTPCPDRP  YYRCYTYLAC  IAQTVTATSY540
HPTCTCRMGN  SSEPNAVVDS  HLRVRGVNNL  RVVDASIMPK  IINANTNAAT  MMIGERGADF600
ILNDSLSK608

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help