CAZyme3D

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Entry ID

Information for CAZyme ID: UWX63152.1

Basic Information

GenBank IDUWX63152.1
FamilyGT4
Sequence Length357
UniProt IDUWX63152.1(MOD)Download
Average pLDDT?89.59
CAZy50 ID128471
CAZy50 RepYes, UWX63152.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1889240
KingdomBacteria
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus rubellus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKILYIMHVE  WGWIKQRPHF  IAEELSKSHH  VRVYYQKMYS  RFKRSENVSG  IKRSAFFTIP60
KKSNIFLGIV  NNVILKIFFY  TIIKLGKYNF  IYVTHPDQLM  YLPELTIPVI  YDCMDDHSSF120
GDLGKDGDLK  RNEIELFSKA  DLVLFSSFYL  KEKNEMYVDQ  KKTELLFNGI  SERLKEIMRD180
NKGEKILLIK  NIFYIGTIAE  WFDFSAIELI  LERCPSVRFT  IIGPADIKLP  DLGDRVLYMG240
PVDHSQLNKI  VEDADVFIMP  FVLNELIRSV  DPVKMYEYIS  FCRPIISIHY  EELDKFSGFV300
NFYKDRDQLA  IICDLINSSS  LEGYSREQAG  SFISKSTWAK  RVERRLGVYI  KNKRFYE357

Predicted 3D structure by AlphaFold2 with pLDDT = 89.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKILYIMHVE  WGWIKQRPHF  IAEELSKSHH  VRVYYQKMYS  RFKRSENVSG  IKRSAFFTIP60
KKSNIFLGIV  NNVILKIFFY  TIIKLGKYNF  IYVTHPDQLM  YLPELTIPVI  YDCMDDHSSF120
GDLGKDGDLK  RNEIELFSKA  DLVLFSSFYL  KEKNEMYVDQ  KKTELLFNGI  SERLKEIMRD180
NKGEKILLIK  NIFYIGTIAE  WFDFSAIELI  LERCPSVRFT  IIGPADIKLP  DLGDRVLYMG240
PVDHSQLNKI  VEDADVFIMP  FVLNELIRSV  DPVKMYEYIS  FCRPIISIHY  EELDKFSGFV300
NFYKDRDQLA  IICDLINSSS  LEGYSREQAG  SFISKSTWAK  RVERRLGVYI  KNKRFYE357

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MKILYIMHVE  WGWIKQRPHF  IAEELSKSHH  VRVYYQKMYS  RFKRSENVSG  IKRSAFFTIP60
KKSNIFLGIV  NNVILKIFFY  TIIKLGKYNF  IYVTHPDQLM  YLPELTIPVI  YDCMDDHSSF120
GDLGKDGDLK  RNEIELFSKA  DLVLFSSFYL  KEKNEMYVDQ  KKTELLFNGI  SERLKEIMRD180
NKGEKILLIK  NIFYIGTIAE  WFDFSAIELI  LERCPSVRFT  IIGPADIKLP  DLGDRVLYMG240
PVDHSQLNKI  VEDADVFIMP  FVLNELIRSV  DPVKMYEYIS  FCRPIISIHY  EELDKFSGFV300
NFYKDRDQLA  IICDLINSSS  LEGYSREQAG  SFISKSTWAK  RVERRLGVYI  KNKRFYE357

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help