CAZyme3D

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Entry ID

Information for CAZyme ID: UWP52743.1

Basic Information

GenBank IDUWP52743.1
FamilyGH5_4
Sequence Length516
UniProt IDD1P8Y5(100,100)Download
Average pLDDT?90.60
CAZy50 ID65719
CAZy50 RepYes, UWP52743.1
Structure ClusterSC_GH5_clus240
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID537011
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKFKYLYLL  LLGIVCGLAF  SACSYEDDDY  DEPSFKVLNP  ELSFDGTGGV  QTINVQADAQ60
PTASVIEGAD  WCSVAYKDQA  AGTYNFDVTV  AASQEDEVTT  ATVRIIQGYS  RKDVTITRAK120
KGAVVTPDVP  PADMNKTAME  VAQLMYPGWN  LGNTLEGGDS  KNLWKNAGIE  TETVWQNAKT180
TQALIDAVKA  AGFKSVRIPC  SWVMGHITDA  EKCTIDPAWM  KRVKEVVDYC  IKDGLYVIIN240
QHWDGGWIEH  NGMTANADIK  TTKAQLTKIW  TQIADNFKTY  DEHLLFAGMN  EPGVGAGEGD300
IIGVADMSNR  IAEYEQTFIE  AVRATGGNNA  KRVLIVQGPN  TDIDKFVANN  YMSKIHDSAT360
DRLMVEVHFY  DPYQFTDLSE  DKDWGKYYLY  WGKNNTNGSE  AGRTADAKYN  EDYVEAQMKK420
MKTNFFDKGY  PVLIGEFGAN  QRLAIGKDAV  HDASVKDYYK  AVVTSAINNG  CVPMAWDTNG480
GLPSMTIFNR  AGASVSNTNM  LESITAGVAA  AKWPAK516

Predicted 3D structure by AlphaFold2 with pLDDT = 90.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKFKYLYLL  LLGIVCGLAF  SACSYEDDDY  DEPSFKVLNP  ELSFDGTGGV  QTINVQADAQ60
PTASVIEGAD  WCSVAYKDQA  AGTYNFDVTV  AASQEDEVTT  ATVRIIQGYS  RKDVTITRAK120
KGAVVTPDVP  PADMNKTAME  VAQLMYPGWN  LGNTLEGGDS  KNLWKNAGIE  TETVWQNAKT180
TQALIDAVKA  AGFKSVRIPC  SWVMGHITDA  EKCTIDPAWM  KRVKEVVDYC  IKDGLYVIIN240
QHWDGGWIEH  NGMTANADIK  TTKAQLTKIW  TQIADNFKTY  DEHLLFAGMN  EPGVGAGEGD300
IIGVADMSNR  IAEYEQTFIE  AVRATGGNNA  KRVLIVQGPN  TDIDKFVANN  YMSKIHDSAT360
DRLMVEVHFY  DPYQFTDLSE  DKDWGKYYLY  WGKNNTNGSE  AGRTADAKYN  EDYVEAQMKK420
MKTNFFDKGY  PVLIGEFGAN  QRLAIGKDAV  HDASVKDYYK  AVVTSAINNG  CVPMAWDTNG480
GLPSMTIFNR  AGASVSNTNM  LESITAGVAA  AKWPAK516

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(172-479)

MKKFKYLYLL  LLGIVCGLAF  SACSYEDDDY  DEPSFKVLNP  ELSFDGTGGV  QTINVQADAQ60
PTASVIEGAD  WCSVAYKDQA  AGTYNFDVTV  AASQEDEVTT  ATVRIIQGYS  RKDVTITRAK120
KGAVVTPDVP  PADMNKTAME  VAQLMYPGWN  LGNTLEGGDS  KNLWKNAGIE  TETVWQNAKT180
TQALIDAVKA  AGFKSVRIPC  SWVMGHITDA  EKCTIDPAWM  KRVKEVVDYC  IKDGLYVIIN240
QHWDGGWIEH  NGMTANADIK  TTKAQLTKIW  TQIADNFKTY  DEHLLFAGMN  EPGVGAGEGD300
IIGVADMSNR  IAEYEQTFIE  AVRATGGNNA  KRVLIVQGPN  TDIDKFVANN  YMSKIHDSAT360
DRLMVEVHFY  DPYQFTDLSE  DKDWGKYYLY  WGKNNTNGSE  AGRTADAKYN  EDYVEAQMKK420
MKTNFFDKGY  PVLIGEFGAN  QRLAIGKDAV  HDASVKDYYK  AVVTSAINNG  CVPMAWDTNG480
GLPSMTIFNR  AGASVSNTNM  LESITAGVAA  AKWPAK516

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help