CAZyme3D

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Entry ID

Information for CAZyme ID: UWO78336.1

Basic Information

GenBank IDUWO78336.1
FamilyGH170
Sequence Length379
UniProt IDC0D5D6(100,100)Download
Average pLDDT?92.64
CAZy50 ID113047
CAZy50 RepYes, UWO78336.1
Structure ClusterSC_GH170_clus2
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID518636
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusEnterocloster
SpeciesEnterocloster asparagiformis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNSSIAIYPS  VQWRQQTVLW  SDYLEKAGKY  GFREVFSSIH  LPELALKDQV  EMLEELARTA60
NHLGMELTVD  IGGGEIGQLL  ADSQMCARVR  SAGIGLLRLD  YGFCTEQAGA  LYNRLGIKGF120
VVNASIYDRE  EAEAVKKNLT  AIDSRLELRA  CHNFYPRPET  GLDREFFNEQ  NRIFAELGLI180
TYACIPGKSY  PRPPLGLGLP  TLEQHRGMNL  EQVCVDLVCS  PGIGGVMAAD  EFFNETELAC240
VARAVNREAL  TLQIRLETGV  GQVERELILG  TSHHIRYDSN  RQVLRSRTSR  EMSRIGAKVA300
PGLTGERRRG  MVTVDNERYG  RYSSEVQILL  ADLEADSRVN  CCGQISEEDM  WKLDFYRQGF360
DYQFQEITEI  GEGISSGAI379

Predicted 3D structure by AlphaFold2 with pLDDT = 92.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNSSIAIYPS  VQWRQQTVLW  SDYLEKAGKY  GFREVFSSIH  LPELALKDQV  EMLEELARTA60
NHLGMELTVD  IGGGEIGQLL  ADSQMCARVR  SAGIGLLRLD  YGFCTEQAGA  LYNRLGIKGF120
VVNASIYDRE  EAEAVKKNLT  AIDSRLELRA  CHNFYPRPET  GLDREFFNEQ  NRIFAELGLI180
TYACIPGKSY  PRPPLGLGLP  TLEQHRGMNL  EQVCVDLVCS  PGIGGVMAAD  EFFNETELAC240
VARAVNREAL  TLQIRLETGV  GQVERELILG  TSHHIRYDSN  RQVLRSRTSR  EMSRIGAKVA300
PGLTGERRRG  MVTVDNERYG  RYSSEVQILL  ADLEADSRVN  CCGQISEEDM  WKLDFYRQGF360
DYQFQEITEI  GEGISSGAI379

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH170(5-364)

MNSSIAIYPS  VQWRQQTVLW  SDYLEKAGKY  GFREVFSSIH  LPELALKDQV  EMLEELARTA60
NHLGMELTVD  IGGGEIGQLL  ADSQMCARVR  SAGIGLLRLD  YGFCTEQAGA  LYNRLGIKGF120
VVNASIYDRE  EAEAVKKNLT  AIDSRLELRA  CHNFYPRPET  GLDREFFNEQ  NRIFAELGLI180
TYACIPGKSY  PRPPLGLGLP  TLEQHRGMNL  EQVCVDLVCS  PGIGGVMAAD  EFFNETELAC240
VARAVNREAL  TLQIRLETGV  GQVERELILG  TSHHIRYDSN  RQVLRSRTSR  EMSRIGAKVA300
PGLTGERRRG  MVTVDNERYG  RYSSEVQILL  ADLEADSRVN  CCGQISEEDM  WKLDFYRQGF360
DYQFQEITEI  GEGISSGAI379

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help