CAZyme3D

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Entry ID

Information for CAZyme ID: UVN56542.1

Basic Information

GenBank IDUVN56542.1
FamilyGT89
Sequence Length816
UniProt IDA0A8H1L9C3(100,100)Download
Average pLDDT?75.55
CAZy50 ID25839
CAZy50 RepYes, UVN56542.1
Structure ClusterSC_GT89_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1888
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces albus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRSDELPVP  QPTPGTRAFG  LPGTLAQRWN  AFAVAACGAV  VLVMGYRHRW  TNDDALIYTR60
AVRQILAGNG  PVFNVQERAE  SSTGTLWQWL  LAAGGALPGV  SDPLRLAVAL  GLLLTVAGYL120
LALDGTRRML  RIHRPAGALL  PAGVLVLLPL  CATWDYATSG  LETGLSFAYL  GGAWWLLVRA180
RTLRAAHEAP  AGRGRPALAP  TAFALGLGPL  VRPDLALVSG  VFLAALWLLW  RPPLRTTLGW240
AGAAAALPCA  YEIFRAGYYG  VLVPLPALAK  EASGTQWQFG  WDYLRNTLDP  YLLWIPLTLL300
AGYIGYRAYG  VYRAYRAHRA  SAVAGAPAAP  ETSAALGTSA  TGGAPATPDA  SAAFGTSATA360
DASATPDTSA  GLGTSATAGT  PATPDTSAGI  DTSATAGTPD  TPETSAALGT  SATTGTPATS420
TTSAEPDAPA  PPGASAEPGG  AVTTGTPAEP  GSAVTTGTSA  APGTTEAPGT  SATFDTAVTP480
GSPAAPGTVT  PGTAAPVGSA  IGGGSAVGAS  LPHGVPVRRW  VRWWGGTRDG  RAVSRPYTAD540
AVLVGAPVAA  GLLSAFFVVK  IGGDFMHGRM  VLPALFLLLL  PIFLLPLGRA  ATVLAGALAA600
WAVVCGLLLR  PPLESPDDPR  IVFDSHTVYQ  RVLGDTHPVG  QSAHTERRLA  FSDAARHTLR660
TGRHALVLRL  PHDAGYPVVP  LAPHVRAPVA  AAEARLGHAG  AVLPLDGFVI  DTLGLSNPLG720
AHTEPTSRRK  AGHEKPLDRA  WVVADVTAPG  TRVPGVDPDR  VRAARHALTC  GPLPELLASA780
REPLTPGRFW  SNLTGAWDRT  RFRIPADPVE  AERRLC816

Predicted 3D structure by AlphaFold2 with pLDDT = 75.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSRSDELPVP  QPTPGTRAFG  LPGTLAQRWN  AFAVAACGAV  VLVMGYRHRW  TNDDALIYTR60
AVRQILAGNG  PVFNVQERAE  SSTGTLWQWL  LAAGGALPGV  SDPLRLAVAL  GLLLTVAGYL120
LALDGTRRML  RIHRPAGALL  PAGVLVLLPL  CATWDYATSG  LETGLSFAYL  GGAWWLLVRA180
RTLRAAHEAP  AGRGRPALAP  TAFALGLGPL  VRPDLALVSG  VFLAALWLLW  RPPLRTTLGW240
AGAAAALPCA  YEIFRAGYYG  VLVPLPALAK  EASGTQWQFG  WDYLRNTLDP  YLLWIPLTLL300
AGYIGYRAYG  VYRAYRAHRA  SAVAGAPAAP  ETSAALGTSA  TGGAPATPDA  SAAFGTSATA360
DASATPDTSA  GLGTSATAGT  PATPDTSAGI  DTSATAGTPD  TPETSAALGT  SATTGTPATS420
TTSAEPDAPA  PPGASAEPGG  AVTTGTPAEP  GSAVTTGTSA  APGTTEAPGT  SATFDTAVTP480
GSPAAPGTVT  PGTAAPVGSA  IGGGSAVGAS  LPHGVPVRRW  VRWWGGTRDG  RAVSRPYTAD540
AVLVGAPVAA  GLLSAFFVVK  IGGDFMHGRM  VLPALFLLLL  PIFLLPLGRA  ATVLAGALAA600
WAVVCGLLLR  PPLESPDDPR  IVFDSHTVYQ  RVLGDTHPVG  QSAHTERRLA  FSDAARHTLR660
TGRHALVLRL  PHDAGYPVVP  LAPHVRAPVA  AAEARLGHAG  AVLPLDGFVI  DTLGLSNPLG720
AHTEPTSRRK  AGHEKPLDRA  WVVADVTAPG  TRVPGVDPDR  VRAARHALTC  GPLPELLASA780
REPLTPGRFW  SNLTGAWDRT  RFRIPADPVE  AERRLC816

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(32-303)+GT89(542-814)

MSRSDELPVP  QPTPGTRAFG  LPGTLAQRWN  AFAVAACGAV  VLVMGYRHRW  TNDDALIYTR60
AVRQILAGNG  PVFNVQERAE  SSTGTLWQWL  LAAGGALPGV  SDPLRLAVAL  GLLLTVAGYL120
LALDGTRRML  RIHRPAGALL  PAGVLVLLPL  CATWDYATSG  LETGLSFAYL  GGAWWLLVRA180
RTLRAAHEAP  AGRGRPALAP  TAFALGLGPL  VRPDLALVSG  VFLAALWLLW  RPPLRTTLGW240
AGAAAALPCA  YEIFRAGYYG  VLVPLPALAK  EASGTQWQFG  WDYLRNTLDP  YLLWIPLTLL300
AGYIGYRAYG  VYRAYRAHRA  SAVAGAPAAP  ETSAALGTSA  TGGAPATPDA  SAAFGTSATA360
DASATPDTSA  GLGTSATAGT  PATPDTSAGI  DTSATAGTPD  TPETSAALGT  SATTGTPATS420
TTSAEPDAPA  PPGASAEPGG  AVTTGTPAEP  GSAVTTGTSA  APGTTEAPGT  SATFDTAVTP480
GSPAAPGTVT  PGTAAPVGSA  IGGGSAVGAS  LPHGVPVRRW  VRWWGGTRDG  RAVSRPYTAD540
AVLVGAPVAA  GLLSAFFVVK  IGGDFMHGRM  VLPALFLLLL  PIFLLPLGRA  ATVLAGALAA600
WAVVCGLLLR  PPLESPDDPR  IVFDSHTVYQ  RVLGDTHPVG  QSAHTERRLA  FSDAARHTLR660
TGRHALVLRL  PHDAGYPVVP  LAPHVRAPVA  AAEARLGHAG  AVLPLDGFVI  DTLGLSNPLG720
AHTEPTSRRK  AGHEKPLDRA  WVVADVTAPG  TRVPGVDPDR  VRAARHALTC  GPLPELLASA780
REPLTPGRFW  SNLTGAWDRT  RFRIPADPVE  AERRLC816

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help