CAZyme3D

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Entry ID

Information for CAZyme ID: UUY00630.1

Basic Information

GenBank IDUUY00630.1
FamilyPL10_2
Sequence Length928
UniProt IDUUY00630.1(MOD)Download
Average pLDDT?57.03
CAZy50 ID17791
CAZy50 RepYes, UUY00630.1
Structure ClusterSC_PL10_clus32
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2898433
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. J315

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIDRRKLLAA  SAALALTPAV  ARAQTPSSSE  IAATMKRATR  FMVEKLAYRG  GYLWSYLPDR60
SRVWGELEAY  KTMVWVQPPG  TATMGHLYLD  AYHATGDDYY  YQAAARAAQA  LIDGQLPTGG120
WGYFIDFGGP  ASTKRWYDTI  GKNAWRMEEF  QHDWGNATFD  DQGTGEAIRL  LIRIYVEKRE180
QRFKRGLNKA  IEFIFASQLD  NGGWPQRWPR  VKDGGLHGKP  DYTGLITFND  GVIYDNIDVL240
LTYHQAIGDP  RVLPAIERAM  DIYLKTQHPA  PQAGWGLQHR  ADFSPAGART  YEPEALVTHT300
TASNIEELMR  FYRLTGNAKY  LAPIPAALDW  LDSVRLPEEL  RVGTRHFPTF  VEIGSNKPLW360
VHRRGSNVVN  GEYYVDHDPA  HTIGHYNPRR  SVDVAKLRRE  YEKLRAIPGG  PVSKDSAFAQ420
GPPAAVALLG  RCGRARVGHE  CRRRQERGRA  GRVAEHRGLV  ADAAQGDQSP  VSRSGIEGGR480
AGRFPLDQCR  RQQRHVAIRR  QGRADRDFDR  HLYRSHGDPD  RGAAQRFLGG  VDDQAAVAQL540
IARDQRVPAN  IGRALQSHAG  DAQQPVEEHG  GFVQRHARAG  AAMLAVTKGE  ARAGDLGRAG600
PVGVERVRAG  TDRRRIAIRR  ADIERDGAAF  RVAIERTNHG  FEPEDFLEDR  DLPIGIGGKE660
LRAQFGPFEQ  MPARHGDEFA  RRDHPGRAIS  KTFGEDIERG  VTLAQQVRDH  VLTRRGAACL720
DRRFHVPGVE  APHAPLAEQE  AHQLCNLAAS  GLEGGAEKCV  EAAAHARNVA  FGQADNLRRD780
GHREFERQPV  EIAAAIAHQP  CDQRGAGTLH  QLAIAGLDHA  RGKEARGPAA  LAAMRLAMQE840
QDRRAGAAAI  AQDHLGLEPR  LTRIRIAQNR  AHGIEAGQGG  RVEQSAARRA  CRFAVVARMI900
DRTASRIRGG  DLRRGWHGDL  HIVIYYGS928

Predicted 3D structure by AlphaFold2 with pLDDT = 57.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIDRRKLLAA  SAALALTPAV  ARAQTPSSSE  IAATMKRATR  FMVEKLAYRG  GYLWSYLPDR60
SRVWGELEAY  KTMVWVQPPG  TATMGHLYLD  AYHATGDDYY  YQAAARAAQA  LIDGQLPTGG120
WGYFIDFGGP  ASTKRWYDTI  GKNAWRMEEF  QHDWGNATFD  DQGTGEAIRL  LIRIYVEKRE180
QRFKRGLNKA  IEFIFASQLD  NGGWPQRWPR  VKDGGLHGKP  DYTGLITFND  GVIYDNIDVL240
LTYHQAIGDP  RVLPAIERAM  DIYLKTQHPA  PQAGWGLQHR  ADFSPAGART  YEPEALVTHT300
TASNIEELMR  FYRLTGNAKY  LAPIPAALDW  LDSVRLPEEL  RVGTRHFPTF  VEIGSNKPLW360
VHRRGSNVVN  GEYYVDHDPA  HTIGHYNPRR  SVDVAKLRRE  YEKLRAIPGG  PVSKDSAFAQ420
GPPAAVALLG  RCGRARVGHE  CRRRQERGRA  GRVAEHRGLV  ADAAQGDQSP  VSRSGIEGGR480
AGRFPLDQCR  RQQRHVAIRR  QGRADRDFDR  HLYRSHGDPD  RGAAQRFLGG  VDDQAAVAQL540
IARDQRVPAN  IGRALQSHAG  DAQQPVEEHG  GFVQRHARAG  AAMLAVTKGE  ARAGDLGRAG600
PVGVERVRAG  TDRRRIAIRR  ADIERDGAAF  RVAIERTNHG  FEPEDFLEDR  DLPIGIGGKE660
LRAQFGPFEQ  MPARHGDEFA  RRDHPGRAIS  KTFGEDIERG  VTLAQQVRDH  VLTRRGAACL720
DRRFHVPGVE  APHAPLAEQE  AHQLCNLAAS  GLEGGAEKCV  EAAAHARNVA  FGQADNLRRD780
GHREFERQPV  EIAAAIAHQP  CDQRGAGTLH  QLAIAGLDHA  RGKEARGPAA  LAAMRLAMQE840
QDRRAGAAAI  AQDHLGLEPR  LTRIRIAQNR  AHGIEAGQGG  RVEQSAARRA  CRFAVVARMI900
DRTASRIRGG  DLRRGWHGDL  HIVIYYGS928

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_2(115-387)

MIDRRKLLAA  SAALALTPAV  ARAQTPSSSE  IAATMKRATR  FMVEKLAYRG  GYLWSYLPDR60
SRVWGELEAY  KTMVWVQPPG  TATMGHLYLD  AYHATGDDYY  YQAAARAAQA  LIDGQLPTGG120
WGYFIDFGGP  ASTKRWYDTI  GKNAWRMEEF  QHDWGNATFD  DQGTGEAIRL  LIRIYVEKRE180
QRFKRGLNKA  IEFIFASQLD  NGGWPQRWPR  VKDGGLHGKP  DYTGLITFND  GVIYDNIDVL240
LTYHQAIGDP  RVLPAIERAM  DIYLKTQHPA  PQAGWGLQHR  ADFSPAGART  YEPEALVTHT300
TASNIEELMR  FYRLTGNAKY  LAPIPAALDW  LDSVRLPEEL  RVGTRHFPTF  VEIGSNKPLW360
VHRRGSNVVN  GEYYVDHDPA  HTIGHYNPRR  SVDVAKLRRE  YEKLRAIPGG  PVSKDSAFAQ420
GPPAAVALLG  RCGRARVGHE  CRRRQERGRA  GRVAEHRGLV  ADAAQGDQSP  VSRSGIEGGR480
AGRFPLDQCR  RQQRHVAIRR  QGRADRDFDR  HLYRSHGDPD  RGAAQRFLGG  VDDQAAVAQL540
IARDQRVPAN  IGRALQSHAG  DAQQPVEEHG  GFVQRHARAG  AAMLAVTKGE  ARAGDLGRAG600
PVGVERVRAG  TDRRRIAIRR  ADIERDGAAF  RVAIERTNHG  FEPEDFLEDR  DLPIGIGGKE660
LRAQFGPFEQ  MPARHGDEFA  RRDHPGRAIS  KTFGEDIERG  VTLAQQVRDH  VLTRRGAACL720
DRRFHVPGVE  APHAPLAEQE  AHQLCNLAAS  GLEGGAEKCV  EAAAHARNVA  FGQADNLRRD780
GHREFERQPV  EIAAAIAHQP  CDQRGAGTLH  QLAIAGLDHA  RGKEARGPAA  LAAMRLAMQE840
QDRRAGAAAI  AQDHLGLEPR  LTRIRIAQNR  AHGIEAGQGG  RVEQSAARRA  CRFAVVARMI900
DRTASRIRGG  DLRRGWHGDL  HIVIYYGS928

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help