CAZyme3D

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Entry ID

Information for CAZyme ID: UTT92607.1

Basic Information

GenBank IDUTT92607.1
FamilyCBM50
Sequence Length507
UniProt IDI2FRJ9(100,100)Download
Average pLDDT?55.21
CAZy50 ID67517
CAZy50 RepYes, UTT92607.1
Structure ClusterSC_CBM50_clus118
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID120017
KingdomEukaryota
PhylumBasidiomycota
ClassUstilaginomycetes
OrderUstilaginales
FamilyUstilaginaceae
GenusUstilago
SpeciesUstilago hordei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSATSPWLST  SSSGDDSANA  ISNNELDPWA  AIETGYLCPS  ASMEQQQQLR  SRKSSPALDS60
SRSARSNAQP  VDRHPLRSPS  PAQAACNFAP  RDPGKRGPSA  VASEWKAIGA  GLAGLFGGPS120
SFKASSFNAS  SSNTTPAAGT  LDRLQDWFGL  KDEQQQQQRS  SSSRNAEGEQ  GVRVLIHPVT180
PTDTLSSLAL  HYGADIQVLR  KSNKLWPGDP  VQMRKLIYIP  VESCKHPPRN  AEIKVMPTRG240
GAVSSAESLA  SLRGNDPASN  FMPDTNKAYT  DCTPQLSRFV  PRGQAVHVGK  VAADQLRFFG300
SKDCNSPPQL  GGNVSSSNAS  RFHHDDDDQW  KANTWHFGGA  STKSRSQHRH  NHSNNLSVHA360
LDRDESAHHR  SLRWNEAPPP  HAIIAEAYDG  GKAHQRRRAQ  KSHPLLYDLA  AGLPANTGAA420
SKWARPIQFG  DSLPDGGCGA  SIPPRRGAKA  GGIAKLIDDT  IRGRISVEAA  LQGAFQGVTP480
NTLQPSQQRQ  QQQHTIPTDT  LGNAKQD507

Predicted 3D structure by AlphaFold2 with pLDDT = 55.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSATSPWLST  SSSGDDSANA  ISNNELDPWA  AIETGYLCPS  ASMEQQQQLR  SRKSSPALDS60
SRSARSNAQP  VDRHPLRSPS  PAQAACNFAP  RDPGKRGPSA  VASEWKAIGA  GLAGLFGGPS120
SFKASSFNAS  SSNTTPAAGT  LDRLQDWFGL  KDEQQQQQRS  SSSRNAEGEQ  GVRVLIHPVT180
PTDTLSSLAL  HYGADIQVLR  KSNKLWPGDP  VQMRKLIYIP  VESCKHPPRN  AEIKVMPTRG240
GAVSSAESLA  SLRGNDPASN  FMPDTNKAYT  DCTPQLSRFV  PRGQAVHVGK  VAADQLRFFG300
SKDCNSPPQL  GGNVSSSNAS  RFHHDDDDQW  KANTWHFGGA  STKSRSQHRH  NHSNNLSVHA360
LDRDESAHHR  SLRWNEAPPP  HAIIAEAYDG  GKAHQRRRAQ  KSHPLLYDLA  AGLPANTGAA420
SKWARPIQFG  DSLPDGGCGA  SIPPRRGAKA  GGIAKLIDDT  IRGRISVEAA  LQGAFQGVTP480
NTLQPSQQRQ  QQQHTIPTDT  LGNAKQD507

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MSATSPWLST  SSSGDDSANA  ISNNELDPWA  AIETGYLCPS  ASMEQQQQLR  SRKSSPALDS60
SRSARSNAQP  VDRHPLRSPS  PAQAACNFAP  RDPGKRGPSA  VASEWKAIGA  GLAGLFGGPS120
SFKASSFNAS  SSNTTPAAGT  LDRLQDWFGL  KDEQQQQQRS  SSSRNAEGEQ  GVRVLIHPVT180
PTDTLSSLAL  HYGADIQVLR  KSNKLWPGDP  VQMRKLIYIP  VESCKHPPRN  AEIKVMPTRG240
GAVSSAESLA  SLRGNDPASN  FMPDTNKAYT  DCTPQLSRFV  PRGQAVHVGK  VAADQLRFFG300
SKDCNSPPQL  GGNVSSSNAS  RFHHDDDDQW  KANTWHFGGA  STKSRSQHRH  NHSNNLSVHA360
LDRDESAHHR  SLRWNEAPPP  HAIIAEAYDG  GKAHQRRRAQ  KSHPLLYDLA  AGLPANTGAA420
SKWARPIQFG  DSLPDGGCGA  SIPPRRGAKA  GGIAKLIDDT  IRGRISVEAA  LQGAFQGVTP480
NTLQPSQQRQ  QQQHTIPTDT  LGNAKQD507

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help