CAZyme3D

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Entry ID

Information for CAZyme ID: USW52667.1

Basic Information

GenBank IDUSW52667.1
FamilyCBM21
Sequence Length751
UniProt IDA0A9Q9EJY1(100,100)Download
Average pLDDT?53.45
CAZy50 ID32698
CAZy50 RepYes, USW52667.1
Structure ClusterSC_CBM21_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID215465
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusSeptoria
SpeciesSeptoria linicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPYTPPSQQS  PASSKSSSPI  MSRSSSYHQD  DTHIPRSPAS  TRPQPPRSHS  STSYLHRHRR60
SPSWGSKAST  DGAPPTPTEA  PDSSINATDF  ARNGSIRQSP  PPVNNLRIPT  GAVMSPPDSS120
ENSDGDDSAG  NDRGRELEKN  WDELQQAVRQ  INLQREGSPD  KVGTHLPQQH  TVSAPTSEST180
SPTALTRPAL  SAEARKISHS  RSSTESKVIL  KTTFADSPTQ  TSDDSDEDEG  LMTKPALVRK240
KSGELVKPAL  RPSSRRRYSS  MPGTPTYHKS  VHFNDSDNQT  RHFLQVDKPI  AVSAGSSPVE300
TYDSETEFPF  NEEEHKKPEL  EIKVANFPED  SFDRRAKPIR  VERLFLSADK  TTLVGVVAVQ360
NISFHKAVTA  RFTLDYWKTT  SEVAAEYNND  LRSPPTDGCD  RFNFHIKLSD  QANIDHKTLL420
LCVRYNVAGQ  EFWDSNNDMN  YQIDFHRDEP  KKKKVTIKSS  PLGQRPLNAI  PRSRHNSSAS480
RGRQNRESLD  DDFGARLGSN  SAYSFGSADD  LLGTSTGSIK  LKQKPKRSLM  FASSATTTQP540
QHGLGSRYDF  SSSLSAALGT  AQDKLGQRSG  LMPSGNAAQA  QANGGYFGPL  DRTEPDKAPA600
PIERPDAITT  DRPAMGSDQY  KDLVQKFCYF  TPGPVKSASA  NPPSAHKTTN  LKQEATPAEM660
DGVSETDSPI  RSSSSSGSNT  PTKEQQVAHD  RVKQSPALGP  FISRSQSPVA  PMTGQALGSR720
PASPVAFGYP  YNHSSRGSYF  SEPTRPTAIH  G751

Predicted 3D structure by AlphaFold2 with pLDDT = 53.45 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPYTPPSQQS  PASSKSSSPI  MSRSSSYHQD  DTHIPRSPAS  TRPQPPRSHS  STSYLHRHRR60
SPSWGSKAST  DGAPPTPTEA  PDSSINATDF  ARNGSIRQSP  PPVNNLRIPT  GAVMSPPDSS120
ENSDGDDSAG  NDRGRELEKN  WDELQQAVRQ  INLQREGSPD  KVGTHLPQQH  TVSAPTSEST180
SPTALTRPAL  SAEARKISHS  RSSTESKVIL  KTTFADSPTQ  TSDDSDEDEG  LMTKPALVRK240
KSGELVKPAL  RPSSRRRYSS  MPGTPTYHKS  VHFNDSDNQT  RHFLQVDKPI  AVSAGSSPVE300
TYDSETEFPF  NEEEHKKPEL  EIKVANFPED  SFDRRAKPIR  VERLFLSADK  TTLVGVVAVQ360
NISFHKAVTA  RFTLDYWKTT  SEVAAEYNND  LRSPPTDGCD  RFNFHIKLSD  QANIDHKTLL420
LCVRYNVAGQ  EFWDSNNDMN  YQIDFHRDEP  KKKKVTIKSS  PLGQRPLNAI  PRSRHNSSAS480
RGRQNRESLD  DDFGARLGSN  SAYSFGSADD  LLGTSTGSIK  LKQKPKRSLM  FASSATTTQP540
QHGLGSRYDF  SSSLSAALGT  AQDKLGQRSG  LMPSGNAAQA  QANGGYFGPL  DRTEPDKAPA600
PIERPDAITT  DRPAMGSDQY  KDLVQKFCYF  TPGPVKSASA  NPPSAHKTTN  LKQEATPAEM660
DGVSETDSPI  RSSSSSGSNT  PTKEQQVAHD  RVKQSPALGP  FISRSQSPVA  PMTGQALGSR720
PASPVAFGYP  YNHSSRGSYF  SEPTRPTAIH  G751

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM21(337-443)

MPYTPPSQQS  PASSKSSSPI  MSRSSSYHQD  DTHIPRSPAS  TRPQPPRSHS  STSYLHRHRR60
SPSWGSKAST  DGAPPTPTEA  PDSSINATDF  ARNGSIRQSP  PPVNNLRIPT  GAVMSPPDSS120
ENSDGDDSAG  NDRGRELEKN  WDELQQAVRQ  INLQREGSPD  KVGTHLPQQH  TVSAPTSEST180
SPTALTRPAL  SAEARKISHS  RSSTESKVIL  KTTFADSPTQ  TSDDSDEDEG  LMTKPALVRK240
KSGELVKPAL  RPSSRRRYSS  MPGTPTYHKS  VHFNDSDNQT  RHFLQVDKPI  AVSAGSSPVE300
TYDSETEFPF  NEEEHKKPEL  EIKVANFPED  SFDRRAKPIR  VERLFLSADK  TTLVGVVAVQ360
NISFHKAVTA  RFTLDYWKTT  SEVAAEYNND  LRSPPTDGCD  RFNFHIKLSD  QANIDHKTLL420
LCVRYNVAGQ  EFWDSNNDMN  YQIDFHRDEP  KKKKVTIKSS  PLGQRPLNAI  PRSRHNSSAS480
RGRQNRESLD  DDFGARLGSN  SAYSFGSADD  LLGTSTGSIK  LKQKPKRSLM  FASSATTTQP540
QHGLGSRYDF  SSSLSAALGT  AQDKLGQRSG  LMPSGNAAQA  QANGGYFGPL  DRTEPDKAPA600
PIERPDAITT  DRPAMGSDQY  KDLVQKFCYF  TPGPVKSASA  NPPSAHKTTN  LKQEATPAEM660
DGVSETDSPI  RSSSSSGSNT  PTKEQQVAHD  RVKQSPALGP  FISRSQSPVA  PMTGQALGSR720
PASPVAFGYP  YNHSSRGSYF  SEPTRPTAIH  G751

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help