CAZyme3D

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Entry ID

Information for CAZyme ID: USW48535.1

Basic Information

GenBank IDUSW48535.1
FamilyGH36
Sequence Length939
UniProt IDA0A9Q9ALA6(100,100)Download
Average pLDDT?89.27
CAZy50 ID17209
CAZy50 RepYes, USW48535.1
Structure ClusterSC_GH36_clus47
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID215465
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusSeptoria
SpeciesSeptoria linicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVKRVKQKQ  ISFGYCDTVS  GERVYPPRKE  TTEMAEADLL  PEQMPPEQAA  AFTPDSDDEM60
NDVYVNTTVW  PPLAQATTIA  KDQDGVTFTV  LVEHSSSSTL  IDGKSLKVNI  WHNHGGEHDW120
AELPLEPSSS  SDRAFLLHRP  KEQTLSRSWF  TGHLPGDPKH  GQAVSFTVKY  QLHDDLDWKW180
IKDVTGLSDG  QLVYETTHFE  KHSTYDFKHW  FSGVSADVKV  QSEKPDTDNT  FLYSLTAPVV240
PAFKEDSGYQ  HHQLGQVNHN  ARWFGLVRLW  SPWLAPRQGK  DKFEVDKDAV  ELSFLREDGL300
HVVVLGISGV  ADVVTTFIND  HNGNIIIKAR  NDRTETQTSQ  VLVAVADNFE  VANAAVWYHA360
RKIVQAYGVA  GDENADIKKL  METIQPDDNP  NPEWLEEWYD  GFTFCTWNAL  GQKLTAQKIH420
DALDDLAKEN  INITNLIIDD  NWQSLSEGDS  QFTKGWSAFE  ANKEGFPDGM  KKTTAEIRRR480
HPNIKHIAVW  HAILGYWGGI  DPEGKIAQNY  KTIEVEKEPG  VAGGKFTVVA  AEDAKRMYDD540
FYSFLASAGV  DSVKTDAQFF  LDLLLHAPDR  RNLIQTYQDA  WAVAHLRHLS  SRAISCMSQN600
PQNLFHSQLP  TNKPRLLVRN  SDDFFPEVDA  SHPWHIFCNA  HNSLLTQHLN  VLPDWDMFQT660
SHEWAGFHAA  ARTVSGGPIY  FTDYPGKHDI  TLIKQMTAQT  PRDKTVILRP  QVIGKSLNPY720
NQYSDLALLK  IGTYHGFAQT  GTGILGLFNV  SGQHLSEFVK  LDEFPGTDSA  AKDAEYVVGE780
FTSGLFSQPI  KLSDSASDLV  GVELQTQGWE  ILTSYALRSF  TLSSSTTPVK  VALLGLIEKM840
TGSAAVTGYD  VYVEDNGRLR  FWVSLKALGV  LGIWISDLAE  RNVDEGFIVL  IYGKPIPRNC900
VKKSEKDERV  LQIDVERAWR  ESGEDVGWGN  EVSLEVFMK939

Predicted 3D structure by AlphaFold2 with pLDDT = 89.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVVKRVKQKQ  ISFGYCDTVS  GERVYPPRKE  TTEMAEADLL  PEQMPPEQAA  AFTPDSDDEM60
NDVYVNTTVW  PPLAQATTIA  KDQDGVTFTV  LVEHSSSSTL  IDGKSLKVNI  WHNHGGEHDW120
AELPLEPSSS  SDRAFLLHRP  KEQTLSRSWF  TGHLPGDPKH  GQAVSFTVKY  QLHDDLDWKW180
IKDVTGLSDG  QLVYETTHFE  KHSTYDFKHW  FSGVSADVKV  QSEKPDTDNT  FLYSLTAPVV240
PAFKEDSGYQ  HHQLGQVNHN  ARWFGLVRLW  SPWLAPRQGK  DKFEVDKDAV  ELSFLREDGL300
HVVVLGISGV  ADVVTTFIND  HNGNIIIKAR  NDRTETQTSQ  VLVAVADNFE  VANAAVWYHA360
RKIVQAYGVA  GDENADIKKL  METIQPDDNP  NPEWLEEWYD  GFTFCTWNAL  GQKLTAQKIH420
DALDDLAKEN  INITNLIIDD  NWQSLSEGDS  QFTKGWSAFE  ANKEGFPDGM  KKTTAEIRRR480
HPNIKHIAVW  HAILGYWGGI  DPEGKIAQNY  KTIEVEKEPG  VAGGKFTVVA  AEDAKRMYDD540
FYSFLASAGV  DSVKTDAQFF  LDLLLHAPDR  RNLIQTYQDA  WAVAHLRHLS  SRAISCMSQN600
PQNLFHSQLP  TNKPRLLVRN  SDDFFPEVDA  SHPWHIFCNA  HNSLLTQHLN  VLPDWDMFQT660
SHEWAGFHAA  ARTVSGGPIY  FTDYPGKHDI  TLIKQMTAQT  PRDKTVILRP  QVIGKSLNPY720
NQYSDLALLK  IGTYHGFAQT  GTGILGLFNV  SGQHLSEFVK  LDEFPGTDSA  AKDAEYVVGE780
FTSGLFSQPI  KLSDSASDLV  GVELQTQGWE  ILTSYALRSF  TLSSSTTPVK  VALLGLIEKM840
TGSAAVTGYD  VYVEDNGRLR  FWVSLKALGV  LGIWISDLAE  RNVDEGFIVL  IYGKPIPRNC900
VKKSEKDERV  LQIDVERAWR  ESGEDVGWGN  EVSLEVFMK939

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MVVKRVKQKQ  ISFGYCDTVS  GERVYPPRKE  TTEMAEADLL  PEQMPPEQAA  AFTPDSDDEM60
NDVYVNTTVW  PPLAQATTIA  KDQDGVTFTV  LVEHSSSSTL  IDGKSLKVNI  WHNHGGEHDW120
AELPLEPSSS  SDRAFLLHRP  KEQTLSRSWF  TGHLPGDPKH  GQAVSFTVKY  QLHDDLDWKW180
IKDVTGLSDG  QLVYETTHFE  KHSTYDFKHW  FSGVSADVKV  QSEKPDTDNT  FLYSLTAPVV240
PAFKEDSGYQ  HHQLGQVNHN  ARWFGLVRLW  SPWLAPRQGK  DKFEVDKDAV  ELSFLREDGL300
HVVVLGISGV  ADVVTTFIND  HNGNIIIKAR  NDRTETQTSQ  VLVAVADNFE  VANAAVWYHA360
RKIVQAYGVA  GDENADIKKL  METIQPDDNP  NPEWLEEWYD  GFTFCTWNAL  GQKLTAQKIH420
DALDDLAKEN  INITNLIIDD  NWQSLSEGDS  QFTKGWSAFE  ANKEGFPDGM  KKTTAEIRRR480
HPNIKHIAVW  HAILGYWGGI  DPEGKIAQNY  KTIEVEKEPG  VAGGKFTVVA  AEDAKRMYDD540
FYSFLASAGV  DSVKTDAQFF  LDLLLHAPDR  RNLIQTYQDA  WAVAHLRHLS  SRAISCMSQN600
PQNLFHSQLP  TNKPRLLVRN  SDDFFPEVDA  SHPWHIFCNA  HNSLLTQHLN  VLPDWDMFQT660
SHEWAGFHAA  ARTVSGGPIY  FTDYPGKHDI  TLIKQMTAQT  PRDKTVILRP  QVIGKSLNPY720
NQYSDLALLK  IGTYHGFAQT  GTGILGLFNV  SGQHLSEFVK  LDEFPGTDSA  AKDAEYVVGE780
FTSGLFSQPI  KLSDSASDLV  GVELQTQGWE  ILTSYALRSF  TLSSSTTPVK  VALLGLIEKM840
TGSAAVTGYD  VYVEDNGRLR  FWVSLKALGV  LGIWISDLAE  RNVDEGFIVL  IYGKPIPRNC900
VKKSEKDERV  LQIDVERAWR  ESGEDVGWGN  EVSLEVFMK939

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help