CAZyme3D

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Entry ID

Information for CAZyme ID: USW48406.1

Basic Information

GenBank IDUSW48406.1
FamilyGH5_49
Sequence Length543
UniProt IDA0A9Q9EE51(100,100)Download
Average pLDDT?90.80
CAZy50 ID60744
CAZy50 RepYes, USW48406.1
Structure ClusterSC_GH5_clus237
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID215465
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusSeptoria
SpeciesSeptoria linicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPIMRRFIDK  AKSTFDDYTF  NEKPQKQQTF  PAAQQPFIAE  QNNTTAVSTG  IQAVTLRDVT60
RYRYHHGANL  GSIFIQERWL  TGSMFPEGSS  GSSELAAAEA  NIKALGLEGA  RQKHEKHWRE120
FTSNADLDWL  RDVGKCTTIR  LPIGYFTLGP  AYCMGTAFEK  VAPLYENAWQ  AVKDLIGRMH180
QRGIGVLIDV  HGLPGGANAQ  EHSGTNSNKA  ELWSSRKNRE  LATRVMCFIA  HQTRALDGVA240
GIQIVNEAEW  DARGMYDWYD  EILREVSKVD  ASVPIYVSDG  WDLNRALSWI  QARNVMQRCP300
NPIVVDTHLY  WCFDQKDVQK  SPYDIVGEAW  ERLRELDGKE  GSVHDRGAVQ  LVVGEYSCVL360
AEEAWHKGEG  ATKEELVVMF  GNAQSQRHQQ  RAGGSFFWTA  KMDWMPGGEW  GFKQMTDQGA420
IIPPPSLTLS  ADEVDSRIAN  AQTQRDFRKG  TVWGSHCQYW  DSTNPGEYEH  WRFEEGFALG480
WDDASSFFSL  RSQNRQRGGD  KIGMLDLWVL  KRLRESGQTG  RFVWEWEQGF  RQGVKAFYEA540
VGL543

Predicted 3D structure by AlphaFold2 with pLDDT = 90.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPIMRRFIDK  AKSTFDDYTF  NEKPQKQQTF  PAAQQPFIAE  QNNTTAVSTG  IQAVTLRDVT60
RYRYHHGANL  GSIFIQERWL  TGSMFPEGSS  GSSELAAAEA  NIKALGLEGA  RQKHEKHWRE120
FTSNADLDWL  RDVGKCTTIR  LPIGYFTLGP  AYCMGTAFEK  VAPLYENAWQ  AVKDLIGRMH180
QRGIGVLIDV  HGLPGGANAQ  EHSGTNSNKA  ELWSSRKNRE  LATRVMCFIA  HQTRALDGVA240
GIQIVNEAEW  DARGMYDWYD  EILREVSKVD  ASVPIYVSDG  WDLNRALSWI  QARNVMQRCP300
NPIVVDTHLY  WCFDQKDVQK  SPYDIVGEAW  ERLRELDGKE  GSVHDRGAVQ  LVVGEYSCVL360
AEEAWHKGEG  ATKEELVVMF  GNAQSQRHQQ  RAGGSFFWTA  KMDWMPGGEW  GFKQMTDQGA420
IIPPPSLTLS  ADEVDSRIAN  AQTQRDFRKG  TVWGSHCQYW  DSTNPGEYEH  WRFEEGFALG480
WDDASSFFSL  RSQNRQRGGD  KIGMLDLWVL  KRLRESGQTG  RFVWEWEQGF  RQGVKAFYEA540
VGL543

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_49(113-408)

MPIMRRFIDK  AKSTFDDYTF  NEKPQKQQTF  PAAQQPFIAE  QNNTTAVSTG  IQAVTLRDVT60
RYRYHHGANL  GSIFIQERWL  TGSMFPEGSS  GSSELAAAEA  NIKALGLEGA  RQKHEKHWRE120
FTSNADLDWL  RDVGKCTTIR  LPIGYFTLGP  AYCMGTAFEK  VAPLYENAWQ  AVKDLIGRMH180
QRGIGVLIDV  HGLPGGANAQ  EHSGTNSNKA  ELWSSRKNRE  LATRVMCFIA  HQTRALDGVA240
GIQIVNEAEW  DARGMYDWYD  EILREVSKVD  ASVPIYVSDG  WDLNRALSWI  QARNVMQRCP300
NPIVVDTHLY  WCFDQKDVQK  SPYDIVGEAW  ERLRELDGKE  GSVHDRGAVQ  LVVGEYSCVL360
AEEAWHKGEG  ATKEELVVMF  GNAQSQRHQQ  RAGGSFFWTA  KMDWMPGGEW  GFKQMTDQGA420
IIPPPSLTLS  ADEVDSRIAN  AQTQRDFRKG  TVWGSHCQYW  DSTNPGEYEH  WRFEEGFALG480
WDDASSFFSL  RSQNRQRGGD  KIGMLDLWVL  KRLRESGQTG  RFVWEWEQGF  RQGVKAFYEA540
VGL543

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help