Information for CAZyme ID: USF87319.1
Basic Information
GenBank ID | USF87319.1 |
Family | PL39 |
Sequence Length | 1158 |
UniProt ID | A0A9J6ZXC2(100,100)![]() |
Average pLDDT? | 55.88 |
CAZy50 ID | 8785 |
CAZy50 Rep | Yes, USF87319.1 |
Structure Cluster | SC_PL39_clus6 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 393765 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Chromatiales |
Family | Sedimenticolaceae |
Genus | Candidatus Endoriftia |
Species | Candidatus Endoriftia persephone |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSDPIKSMCY LPTGTGLVLS LLNAFVFLLL LLTPTLFMES GIAHAVADDE FVFRVRGQDF | 60 |
SSKNALVAKV RESWNAQKPA IEAQWKAAGS YTTALIRWTV FDVVIFSYSI KHSVKSVSLP | 120 |
DLPTATIGLH TSPNTWAFEV KIPVYWKLNV RASLGTLNAD ADLATEITLA GDIRLETNGH | 180 |
YTLSLKNLRV NANTSTNNSI DYSILGIPFT WRAADYLVEL GLDAIMEPKI RTALLSHDAN | 240 |
HNNVPDLDES FDLASQLPSD ALPSGPLIYP IYTHLTAQNK ITYSLTIEDD TPIVELTFGS | 300 |
PITGAWHPEW AAHPRLLYSA TERASIVQKK NDGLVDWYTS IHTKAGETPQ FATQNAEGIV | 360 |
DEAVGWPMEI NNAHIALSAT LVYDLEGPSA KAFRNNALKV LFNFHDQIGD GLFTETWGHK | 420 |
SLHTAEILTT LSQAYDLLLG TNFPNNISAD EILANEFALP FWDWWRANLF ISIGNTQSAR | 480 |
DLLKRRIDGK LKRLRDLTYL HTHIWDLAES PNISMRNAGA LGISALLFNQ APDAYENISL | 540 |
AMSVIWKRLG ISASQPINDF LTFSKETEGS GYSEGPNYLS YAADLYLPFM WAYNNLLGTA | 600 |
PDQTFINNDW VRQNAIIIPN LITSERARNI HQWSLELSMP NGLRPNIKDG NYAAFYSGLL | 660 |
ANAKASDTDQ RALWAWDFSR HSQLGRRLVD TFVAFDPTLA AQSPETLFPS PSRLNAETGN | 720 |
LAFRNRWTED AIYLHLLADR KWSVEQAIGG LRFPKHQQED NTSFMLYAFG EPLALDSGYG | 780 |
SFAVRDLVNK AGNHNLILVD NLGPTPTSDA FVEKTFDSEQ LDFAEVTIAY GGADITRNAL | 840 |
FIDDRYFVLM DELRATAPHQ YDWLLHGNGI YSSAGERHLW TTANQRQLLL HLTNSSSDGA | 900 |
STVTADPDAL HFNAWSNDPA QALKHTRIAA HEVSSANLNY LALLFPSVSS EALPVTASFS | 960 |
DGSSHTGIRV DFGDYADIFI ARQPGHPGAT RYDVPDLQPD IDNSDITTDA ELLFARVAHT | 1020 |
GHILGLFGRN LSHVTYNNKN YLDQGTPAAL TSTWYPDSDG DFVPDGEDAF PDNPSRWRQA | 1080 |
ITPMLELLLL SSTALAGDLD NNSCVDRSDL RIIQSYIRSH AATEPTPDYD LNGDGSVNIA | 1140 |
DARFLVTQFT NARGAPCK | 1158 |
Predicted 3D structure by AlphaFold2 with pLDDT = 55.88 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSDPIKSMCY LPTGTGLVLS LLNAFVFLLL LLTPTLFMES GIAHAVADDE FVFRVRGQDF | 60 |
SSKNALVAKV RESWNAQKPA IEAQWKAAGS YTTALIRWTV FDVVIFSYSI KHSVKSVSLP | 120 |
DLPTATIGLH TSPNTWAFEV KIPVYWKLNV RASLGTLNAD ADLATEITLA GDIRLETNGH | 180 |
YTLSLKNLRV NANTSTNNSI DYSILGIPFT WRAADYLVEL GLDAIMEPKI RTALLSHDAN | 240 |
HNNVPDLDES FDLASQLPSD ALPSGPLIYP IYTHLTAQNK ITYSLTIEDD TPIVELTFGS | 300 |
PITGAWHPEW AAHPRLLYSA TERASIVQKK NDGLVDWYTS IHTKAGETPQ FATQNAEGIV | 360 |
DEAVGWPMEI NNAHIALSAT LVYDLEGPSA KAFRNNALKV LFNFHDQIGD GLFTETWGHK | 420 |
SLHTAEILTT LSQAYDLLLG TNFPNNISAD EILANEFALP FWDWWRANLF ISIGNTQSAR | 480 |
DLLKRRIDGK LKRLRDLTYL HTHIWDLAES PNISMRNAGA LGISALLFNQ APDAYENISL | 540 |
AMSVIWKRLG ISASQPINDF LTFSKETEGS GYSEGPNYLS YAADLYLPFM WAYNNLLGTA | 600 |
PDQTFINNDW VRQNAIIIPN LITSERARNI HQWSLELSMP NGLRPNIKDG NYAAFYSGLL | 660 |
ANAKASDTDQ RALWAWDFSR HSQLGRRLVD TFVAFDPTLA AQSPETLFPS PSRLNAETGN | 720 |
LAFRNRWTED AIYLHLLADR KWSVEQAIGG LRFPKHQQED NTSFMLYAFG EPLALDSGYG | 780 |
SFAVRDLVNK AGNHNLILVD NLGPTPTSDA FVEKTFDSEQ LDFAEVTIAY GGADITRNAL | 840 |
FIDDRYFVLM DELRATAPHQ YDWLLHGNGI YSSAGERHLW TTANQRQLLL HLTNSSSDGA | 900 |
STVTADPDAL HFNAWSNDPA QALKHTRIAA HEVSSANLNY LALLFPSVSS EALPVTASFS | 960 |
DGSSHTGIRV DFGDYADIFI ARQPGHPGAT RYDVPDLQPD IDNSDITTDA ELLFARVAHT | 1020 |
GHILGLFGRN LSHVTYNNKN YLDQGTPAAL TSTWYPDSDG DFVPDGEDAF PDNPSRWRQA | 1080 |
ITPMLELLLL SSTALAGDLD NNSCVDRSDL RIIQSYIRSH AATEPTPDYD LNGDGSVNIA | 1140 |
DARFLVTQFT NARGAPCK | 1158 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.