Information for CAZyme ID: URM94253.1
Basic Information
| GenBank ID | URM94253.1 |
| Family | GH78 |
| Sequence Length | 842 |
| UniProt ID | A0A1I5ASP7(97.1,100) |
| Average pLDDT? | 85.96 |
| CAZy50 ID | 23606 |
| CAZy50 Rep | Yes, URM94253.1 |
| Structure Cluster | SC_GH78_clus25 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1993 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Streptosporangiales |
| Family | Thermomonosporaceae |
| Genus | Actinomadura |
| Species | Actinomadura madurae |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTPAEKFARS RVSVITSLGL GAAALVAVPS GVASAAPRDP LGLPSLSRAD HYVLAPSSRT | 60 |
| VRPVKVGESH GLNGDYLTAA SEKSETEGHA LEAWSSTTAK ADGVMTRQTG DQAGASFGYR | 120 |
| LRVTPGRPVT LRVEEAGSAT AHYEVLVNGK VVHERKPDPA QAGVWSGDKA GLVHYDVTVP | 180 |
| AGIVGSAREM RVSFRNTDEP GPGARIHAVW TLFKGGRAPA APYGGTVANP SGAFRHGTTT | 240 |
| LTSNEYGRPY VVYDFGKEVG GQVQVTADVR KGTPRLGLAF SESAQYLTTA SDYSQDPVGL | 300 |
| ATETHYFDTQ AGRSAMTDPV IRGGFRYLMV FLDGPGEVKL SDLRLKFTAD PANPDLDGYK | 360 |
| GAFLSSDDTL NRLWYAGAYT VQMATIDPTT GRPYPGQEGP VRNDAIVGEG DSIISDGAKR | 420 |
| DRMIWGGDNA VADPVSYLST GRSGPSANAV GFMAKGQAAS GQIPGLYLTE QHGYNMSWGE | 480 |
| YAAWWVHNYW THYLYTGDQA FFDTWYDAMK KNVAWLESNA GDEGLLTMKG AGGTWGYGND | 540 |
| AGGTYVSSLY VKVLGQAAQA AEAKGDTELA ATYREHAART AKAVNDHLWD ADAGAYKVSP | 600 |
| SDARHPQDGN AMAIVAGVAT GDRAEAVLKF FGDALANPHG DLTVDEPGGV VPQYISPFVS | 660 |
| AQSLLAHSTQ DDMAGAMSLL RRTWYPMLGK AQPGTLWENV SPFGAPQLGS YTSLSHGWAA | 720 |
| APTSFLTNQV LGVTPTSGGF GTFTVLPHPA SGLRWAQGRV PTPHGNITAA WKRQGRTFTL | 780 |
| RVTAPGGTTA TAGVPAGGAS EVRVDGKVVW HDGTAVKPGV TVRDGLVRIP GLTGTSTLTA | 840 |
| SR | 842 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.96 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MTPAEKFARS RVSVITSLGL GAAALVAVPS GVASAAPRDP LGLPSLSRAD HYVLAPSSRT | 60 |
| VRPVKVGESH GLNGDYLTAA SEKSETEGHA LEAWSSTTAK ADGVMTRQTG DQAGASFGYR | 120 |
| LRVTPGRPVT LRVEEAGSAT AHYEVLVNGK VVHERKPDPA QAGVWSGDKA GLVHYDVTVP | 180 |
| AGIVGSAREM RVSFRNTDEP GPGARIHAVW TLFKGGRAPA APYGGTVANP SGAFRHGTTT | 240 |
| LTSNEYGRPY VVYDFGKEVG GQVQVTADVR KGTPRLGLAF SESAQYLTTA SDYSQDPVGL | 300 |
| ATETHYFDTQ AGRSAMTDPV IRGGFRYLMV FLDGPGEVKL SDLRLKFTAD PANPDLDGYK | 360 |
| GAFLSSDDTL NRLWYAGAYT VQMATIDPTT GRPYPGQEGP VRNDAIVGEG DSIISDGAKR | 420 |
| DRMIWGGDNA VADPVSYLST GRSGPSANAV GFMAKGQAAS GQIPGLYLTE QHGYNMSWGE | 480 |
| YAAWWVHNYW THYLYTGDQA FFDTWYDAMK KNVAWLESNA GDEGLLTMKG AGGTWGYGND | 540 |
| AGGTYVSSLY VKVLGQAAQA AEAKGDTELA ATYREHAART AKAVNDHLWD ADAGAYKVSP | 600 |
| SDARHPQDGN AMAIVAGVAT GDRAEAVLKF FGDALANPHG DLTVDEPGGV VPQYISPFVS | 660 |
| AQSLLAHSTQ DDMAGAMSLL RRTWYPMLGK AQPGTLWENV SPFGAPQLGS YTSLSHGWAA | 720 |
| APTSFLTNQV LGVTPTSGGF GTFTVLPHPA SGLRWAQGRV PTPHGNITAA WKRQGRTFTL | 780 |
| RVTAPGGTTA TAGVPAGGAS EVRVDGKVVW HDGTAVKPGV TVRDGLVRIP GLTGTSTLTA | 840 |
| SR | 842 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.