CAZyme3D

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Entry ID

Information for CAZyme ID: UQZ87558.1

Basic Information

GenBank IDUQZ87558.1
FamilyCBM91, GH43_12
Sequence Length535
UniProt IDUQZ87558.1(MOD)Download
Average pLDDT?94.06
CAZy50 ID62097
CAZy50 RepYes, UQZ87558.1
Structure ClusterSC_CBM91_clus2, SC_GH43_clus6
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2020716
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus konkukensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDAAASFFTT  LLKLAEKELT  VNSRTYTNPI  RPGFHPDPSI  VRVGEDYYMV  NSTFQFFPAI60
VISHSRDLVH  WEYIGHAITE  SDYIQLSDLP  DSYGIWAPDI  AYHEGTFYIM  ATLRLHGSGR120
RNILMHSDRP  EGPYSKPVTI  NEEGLDPSLF  IDDDGSRYMV  FGGGGAKLLK  LKDDMSGAEG180
ETVFLWPGTG  KASPEGPHIL  KKDGYYYIIL  AEGGTEYGHC  VTTARSRYLT  GPYESCPDNP240
VHTQTDPAAA  IQRAGHGKLV  QTQHGEWWMV  HLAGRPVAGN  YCTLGRETCL  EPVRWTADGW300
FEVNEGRGPS  VTQRAPQLEE  TVYSYPALDD  FDETALPLHW  QFARNPDEAK  WSLTERPGCV360
RLWTGEADID  TIEARNVLVR  REQHHRYSAS  MKLEFRPERD  GEEAGLVCYY  DTRCFVKLCV420
AQDSGLKLKL  IERRASVTRE  LQSAAIGQTE  AKAIYLQVRV  DRDVRSFYYS  GDNENWVLAG480
RIGDAVFLSD  EGTMEKKAFT  GTMVGFYAVS  GGSGRSIPAD  IDWFHYVPEP  PAAGE535

Predicted 3D structure by AlphaFold2 with pLDDT = 94.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDAAASFFTT  LLKLAEKELT  VNSRTYTNPI  RPGFHPDPSI  VRVGEDYYMV  NSTFQFFPAI60
VISHSRDLVH  WEYIGHAITE  SDYIQLSDLP  DSYGIWAPDI  AYHEGTFYIM  ATLRLHGSGR120
RNILMHSDRP  EGPYSKPVTI  NEEGLDPSLF  IDDDGSRYMV  FGGGGAKLLK  LKDDMSGAEG180
ETVFLWPGTG  KASPEGPHIL  KKDGYYYIIL  AEGGTEYGHC  VTTARSRYLT  GPYESCPDNP240
VHTQTDPAAA  IQRAGHGKLV  QTQHGEWWMV  HLAGRPVAGN  YCTLGRETCL  EPVRWTADGW300
FEVNEGRGPS  VTQRAPQLEE  TVYSYPALDD  FDETALPLHW  QFARNPDEAK  WSLTERPGCV360
RLWTGEADID  TIEARNVLVR  REQHHRYSAS  MKLEFRPERD  GEEAGLVCYY  DTRCFVKLCV420
AQDSGLKLKL  IERRASVTRE  LQSAAIGQTE  AKAIYLQVRV  DRDVRSFYYS  GDNENWVLAG480
RIGDAVFLSD  EGTMEKKAFT  GTMVGFYAVS  GGSGRSIPAD  IDWFHYVPEP  PAAGE535

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_12(27-300)+CBM91(329-528)

MDAAASFFTT  LLKLAEKELT  VNSRTYTNPI  RPGFHPDPSI  VRVGEDYYMV  NSTFQFFPAI60
VISHSRDLVH  WEYIGHAITE  SDYIQLSDLP  DSYGIWAPDI  AYHEGTFYIM  ATLRLHGSGR120
RNILMHSDRP  EGPYSKPVTI  NEEGLDPSLF  IDDDGSRYMV  FGGGGAKLLK  LKDDMSGAEG180
ETVFLWPGTG  KASPEGPHIL  KKDGYYYIIL  AEGGTEYGHC  VTTARSRYLT  GPYESCPDNP240
VHTQTDPAAA  IQRAGHGKLV  QTQHGEWWMV  HLAGRPVAGN  YCTLGRETCL  EPVRWTADGW300
FEVNEGRGPS  VTQRAPQLEE  TVYSYPALDD  FDETALPLHW  QFARNPDEAK  WSLTERPGCV360
RLWTGEADID  TIEARNVLVR  REQHHRYSAS  MKLEFRPERD  GEEAGLVCYY  DTRCFVKLCV420
AQDSGLKLKL  IERRASVTRE  LQSAAIGQTE  AKAIYLQVRV  DRDVRSFYYS  GDNENWVLAG480
RIGDAVFLSD  EGTMEKKAFT  GTMVGFYAVS  GGSGRSIPAD  IDWFHYVPEP  PAAGE535

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help