Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: UQX09338.1
Basic Information
| GenBank ID | UQX09338.1 |
| Family | GT1 |
| Sequence Length | 1526 |
| UniProt ID | UQX09338.1(MOD) |
| Average pLDDT? | 78.97 |
| CAZy50 ID | 3731 |
| CAZy50 Rep | Yes, UQX09338.1 |
| Structure Cluster | SC_GT1_clus100 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2943498 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Mycobacteriaceae |
| Genus | Mycobacterium |
| Species | Candidatus Mycobacterium methanotrophicum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MNEADGATAG GTFHRLGNVV VRWPLPVIGF WVALAAALFL ALPPLAVVAA RHQAEALPTD | 60 |
| APVVVTGKQM AEAFHETGSG STLLVVLTDE KGLGPGDEKT YSALVDKLRH TKDVQTVQDF | 120 |
| LGVPQLREVL QSKDNKVWAL PVVLNGDLGT PQAASSYQQA SEIVRKTVKN SALTANLTGP | 180 |
| AATTADLMGV SQKDMHLIES GTTIMVLLIL IIVYRNPVTM LIPLVTIGVS IATAQGILAG | 240 |
| LGELGLGITG ETIVFMTGVI FGAGTDYGVF LISRYHDYVR LGADSDTAVK KALTSVGKVI | 300 |
| GASAATVAVT FLAMIFSRLQ IFATVGPAIS ICVVVAFLAA VSFLPALLVL AGRRGWIKPR | 360 |
| SDLTHRFWRR SGIRIVRRPR IHLVASLIVL AILASCASLA RYNYDDRKTL PASVESAAGF | 420 |
| AALDRHLPVN SILPQYLFIQ SPHDLRTPEA LADLELMAAR VAQVPDVAMV RGMTRPLGDL | 480 |
| LEQTKATWQA GVIGDKLDDA SKHIADRDGD LNRLSGGADQ LADALGDVRN QVGQSMDNVQ | 540 |
| ALVGILTTLQ NQNGGEEALS SIDNAAQIIA SMHALGGSLT DIIDFAAGAA PLMNALNANP | 600 |
| VCELDPQCVK SRDQLSRIVA ASDDGSLDKM SDLAAKLRST RDAQTLRSTA DGLRRAIRAA | 660 |
| TAAMSSLSAG NAGGMQERLA ELQDGADKLA DGSRRLADGV RLLVDQTKKI GVGLGDSSAF | 720 |
| LLAMKHGATK ESMSGFYIPP QAMKQHDFKT VADIFMSPDG HATRFLIQTK LNPFSTAAMD | 780 |
| QINAITNAAR SAQPNTALAD AKVSMTGMTV GLRDTRDYYN QDIEFIVIAT IGIVLLILVA | 840 |
| LLRAIVAPLY LILSVLISYA SALGIGVIVF QFLLAQELHW SSPGLTFILL VAVGADYNLL | 900 |
| LISRIREESH RGVRSGVIRT VGSTGAVITS AGLIFAASMF GLTFASITTM VQIGFIIGVG | 960 |
| ILLDTFLVRT ITVPAVAALA GHANWWPSRV HPRVPKSVRP SPSAANRQAH SADGIAEDRA | 1020 |
| PHAPALFGTA SAPERVVVNG LDPPVENRIL ETPPVQASSE EDQLNEPPCV GCRPTKDATF | 1080 |
| AVEVEDGQQP AIIVTSRPHT ELSRASMKFV LAAHGTRGDI EPCAAVGVEL MRRGHEVRMA | 1140 |
| APPNLLGFVD SVGLAPVAYG PDSAEQLGED FFRKFWRIQN PISLIRAGQE YITRGWAEMS | 1200 |
| ACLALLAEGA DLVLTGMLYQ EVAANVAEHH GVPLASLHYF PIRPNGHLLP VLPSPLTRSA | 1260 |
| ISAIWWLQWR MTKEAEDAQR QELGLPKATG PSPQRFTERG ALEIQAYEAF CFPGLAAEWG | 1320 |
| GRRPFVGSLT MELSTDADDE VASWIAAGTP PIYFGFGSMP VESPREKVAM ISAACAELGE | 1380 |
| RALICWDAAD FDHVPQTAEV KIMGAVCHAA IFPACRAVVH HGGAGTTAAG MRAGVPALIL | 1440 |
| WIGAEQPVWA TAVRRLKVGR ARRFSAMTEK SLVAELRRIL KPQYATRACE LAPRMTRPAD | 1500 |
| AVDAAADMLE DAARLGIAGD RTRSAR | 1526 |
Predicted 3D structure by AlphaFold2 with pLDDT = 78.97 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MNEADGATAG GTFHRLGNVV VRWPLPVIGF WVALAAALFL ALPPLAVVAA RHQAEALPTD | 60 |
| APVVVTGKQM AEAFHETGSG STLLVVLTDE KGLGPGDEKT YSALVDKLRH TKDVQTVQDF | 120 |
| LGVPQLREVL QSKDNKVWAL PVVLNGDLGT PQAASSYQQA SEIVRKTVKN SALTANLTGP | 180 |
| AATTADLMGV SQKDMHLIES GTTIMVLLIL IIVYRNPVTM LIPLVTIGVS IATAQGILAG | 240 |
| LGELGLGITG ETIVFMTGVI FGAGTDYGVF LISRYHDYVR LGADSDTAVK KALTSVGKVI | 300 |
| GASAATVAVT FLAMIFSRLQ IFATVGPAIS ICVVVAFLAA VSFLPALLVL AGRRGWIKPR | 360 |
| SDLTHRFWRR SGIRIVRRPR IHLVASLIVL AILASCASLA RYNYDDRKTL PASVESAAGF | 420 |
| AALDRHLPVN SILPQYLFIQ SPHDLRTPEA LADLELMAAR VAQVPDVAMV RGMTRPLGDL | 480 |
| LEQTKATWQA GVIGDKLDDA SKHIADRDGD LNRLSGGADQ LADALGDVRN QVGQSMDNVQ | 540 |
| ALVGILTTLQ NQNGGEEALS SIDNAAQIIA SMHALGGSLT DIIDFAAGAA PLMNALNANP | 600 |
| VCELDPQCVK SRDQLSRIVA ASDDGSLDKM SDLAAKLRST RDAQTLRSTA DGLRRAIRAA | 660 |
| TAAMSSLSAG NAGGMQERLA ELQDGADKLA DGSRRLADGV RLLVDQTKKI GVGLGDSSAF | 720 |
| LLAMKHGATK ESMSGFYIPP QAMKQHDFKT VADIFMSPDG HATRFLIQTK LNPFSTAAMD | 780 |
| QINAITNAAR SAQPNTALAD AKVSMTGMTV GLRDTRDYYN QDIEFIVIAT IGIVLLILVA | 840 |
| LLRAIVAPLY LILSVLISYA SALGIGVIVF QFLLAQELHW SSPGLTFILL VAVGADYNLL | 900 |
| LISRIREESH RGVRSGVIRT VGSTGAVITS AGLIFAASMF GLTFASITTM VQIGFIIGVG | 960 |
| ILLDTFLVRT ITVPAVAALA GHANWWPSRV HPRVPKSVRP SPSAANRQAH SADGIAEDRA | 1020 |
| PHAPALFGTA SAPERVVVNG LDPPVENRIL ETPPVQASSE EDQLNEPPCV GCRPTKDATF | 1080 |
| AVEVEDGQQP AIIVTSRPHT ELSRASMKFV LAAHGTRGDI EPCAAVGVEL MRRGHEVRMA | 1140 |
| APPNLLGFVD SVGLAPVAYG PDSAEQLGED FFRKFWRIQN PISLIRAGQE YITRGWAEMS | 1200 |
| ACLALLAEGA DLVLTGMLYQ EVAANVAEHH GVPLASLHYF PIRPNGHLLP VLPSPLTRSA | 1260 |
| ISAIWWLQWR MTKEAEDAQR QELGLPKATG PSPQRFTERG ALEIQAYEAF CFPGLAAEWG | 1320 |
| GRRPFVGSLT MELSTDADDE VASWIAAGTP PIYFGFGSMP VESPREKVAM ISAACAELGE | 1380 |
| RALICWDAAD FDHVPQTAEV KIMGAVCHAA IFPACRAVVH HGGAGTTAAG MRAGVPALIL | 1440 |
| WIGAEQPVWA TAVRRLKVGR ARRFSAMTEK SLVAELRRIL KPQYATRACE LAPRMTRPAD | 1500 |
| AVDAAADMLE DAARLGIAGD RTRSAR | 1526 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.