CAZyme3D

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Entry ID

Information for CAZyme ID: UQN09853.1

Basic Information

GenBank IDUQN09853.1
FamilyGT2
Sequence Length318
UniProt IDUQN09853.1(MOD)Download
Average pLDDT?88.71
CAZy50 ID148143
CAZy50 RepYes, UQN09853.1
Structure ClusterSC_GT2_clus911
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2939437
KingdomBacteria
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus sp. QL22

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVIPTHNRPE  LLIERAVRTA  LKQTLHNIEV  IVVIDGPDPA  TVEALAQLSD  PRLRVLALPD60
NIGAAEARNI  GIRAGKAEWI  ALLDDDDEWA  PQKLERQLVA  ARASAHDQPI  VVCRYFLPTP120
QGTHEEPPRF  PYAGEAIGDY  LMARDAWLSH  DHILMSTILF  ARRELFLQVP  FDPALRRHQD180
WDWLLRVFSF  PGVGFEGVPD  VLATFHFHEP  RPHMCLSANW  SESLAWAKSH  HQSGRLSERA240
YVGFIVHHLS  QFAANDGSAH  AFWSTSRAVL  SGRPRPFEVA  RYVATWLFPQ  HLRRRMHLLA300
ESGWSQLRPV  RQPDAGKA318

Predicted 3D structure by AlphaFold2 with pLDDT = 88.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVIPTHNRPE  LLIERAVRTA  LKQTLHNIEV  IVVIDGPDPA  TVEALAQLSD  PRLRVLALPD60
NIGAAEARNI  GIRAGKAEWI  ALLDDDDEWA  PQKLERQLVA  ARASAHDQPI  VVCRYFLPTP120
QGTHEEPPRF  PYAGEAIGDY  LMARDAWLSH  DHILMSTILF  ARRELFLQVP  FDPALRRHQD180
WDWLLRVFSF  PGVGFEGVPD  VLATFHFHEP  RPHMCLSANW  SESLAWAKSH  HQSGRLSERA240
YVGFIVHHLS  QFAANDGSAH  AFWSTSRAVL  SGRPRPFEVA  RYVATWLFPQ  HLRRRMHLLA300
ESGWSQLRPV  RQPDAGKA318

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(2-116)

MVIPTHNRPE  LLIERAVRTA  LKQTLHNIEV  IVVIDGPDPA  TVEALAQLSD  PRLRVLALPD60
NIGAAEARNI  GIRAGKAEWI  ALLDDDDEWA  PQKLERQLVA  ARASAHDQPI  VVCRYFLPTP120
QGTHEEPPRF  PYAGEAIGDY  LMARDAWLSH  DHILMSTILF  ARRELFLQVP  FDPALRRHQD180
WDWLLRVFSF  PGVGFEGVPD  VLATFHFHEP  RPHMCLSANW  SESLAWAKSH  HQSGRLSERA240
YVGFIVHHLS  QFAANDGSAH  AFWSTSRAVL  SGRPRPFEVA  RYVATWLFPQ  HLRRRMHLLA300
ESGWSQLRPV  RQPDAGKA318

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help