CAZyme3D

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Entry ID

Information for CAZyme ID: UQC78495.1

Basic Information

GenBank IDUQC78495.1
FamilyGH16
Sequence Length297
UniProt IDA0A9Q8SJU5(100,100)Download
Average pLDDT?85.23
CAZy50 ID157381
CAZy50 RepYes, UQC78495.1
Structure ClusterSC_GH16_clus190
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID145971
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderGlomerellales
FamilyGlomerellaceae
GenusColletotrichum
SpeciesColletotrichum lupini

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARRASLIVT  ALLAVCASAA  PAPVPQRSSK  ITAVKNIFTV  GSVSFANRLY  WDFSKLANGA60
KVPDGLRVSG  YPVSDTHVFV  TQNAYINGGY  LNLKVDGGQK  SKPYKSGEVV  TVAQNIKYAS120
VRTVAVFSEP  AGVCNGIFFY  KNDNQETDIE  WVSDANSQSN  AGKRQVWFAN  QATSKSSPKS180
WLSVLPPTNP  TATEHEYRID  WMPGVVRFFV  DGIQTWQTTQ  SVPTQAGPWV  FNNWANGDKG240
WSAGPPAADA  IFKIKEIDML  LLHSSNFQLH  RTYFWITTRQ  PIHEEENGLG  TKGTNWT297

Predicted 3D structure by AlphaFold2 with pLDDT = 85.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MARRASLIVT  ALLAVCASAA  PAPVPQRSSK  ITAVKNIFTV  GSVSFANRLY  WDFSKLANGA60
KVPDGLRVSG  YPVSDTHVFV  TQNAYINGGY  LNLKVDGGQK  SKPYKSGEVV  TVAQNIKYAS120
VRTVAVFSEP  AGVCNGIFFY  KNDNQETDIE  WVSDANSQSN  AGKRQVWFAN  QATSKSSPKS180
WLSVLPPTNP  TATEHEYRID  WMPGVVRFFV  DGIQTWQTTQ  SVPTQAGPWV  FNNWANGDKG240
WSAGPPAADA  IFKIKEIDML  LLHSSNFQLH  RTYFWITTRQ  PIHEEENGLG  TKGTNWT297

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_23(80-257)

MARRASLIVT  ALLAVCASAA  PAPVPQRSSK  ITAVKNIFTV  GSVSFANRLY  WDFSKLANGA60
KVPDGLRVSG  YPVSDTHVFV  TQNAYINGGY  LNLKVDGGQK  SKPYKSGEVV  TVAQNIKYAS120
VRTVAVFSEP  AGVCNGIFFY  KNDNQETDIE  WVSDANSQSN  AGKRQVWFAN  QATSKSSPKS180
WLSVLPPTNP  TATEHEYRID  WMPGVVRFFV  DGIQTWQTTQ  SVPTQAGPWV  FNNWANGDKG240
WSAGPPAADA  IFKIKEIDML  LLHSSNFQLH  RTYFWITTRQ  PIHEEENGLG  TKGTNWT297

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help