Information for CAZyme ID: UPK74650.1
Basic Information
| GenBank ID | UPK74650.1 |
| Family | GH23 |
| Sequence Length | 596 |
| UniProt ID | UPK74650.1(MOD) |
| Average pLDDT? | 54.93 |
| CAZy50 ID | 53004 |
| CAZy50 Rep | Yes, UPK74650.1 |
| Structure Cluster | SC_GH23_clus473 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2933568 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Propionibacteriales |
| Family | Nocardioidaceae |
| Genus | |
| Species | Nocardioidaceae bacterium SCSIO 66511 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSAVVPITLV ASAWGVAIAA TPGSDTIDAK VDSHSDHGTP PISDVPTDAF TKPSFGKVQK | 60 |
| HQSSLAPLAS FSKKQATPMA LKSSPLPSAA VSAYRDAAKV MANVKSACKL DWTLVAAIGR | 120 |
| VESDHGRYGG STLDTRGDSS PEIIGIPLNG SNNTAAIRDT DNGQFDGDTT WDRAVGPMQF | 180 |
| IPSTWNLVGV DGNGDGVKSP HNIYDAALAT AVYLCADNDD LSTKDGASAA VYSYNHSNEY | 240 |
| VANVLAIADR YKDGDFTEES TVYLPDTPDS DDELFDPDTY DPGPSNDDQA NQGNNSNQSG | 300 |
| GARNQLEPKT TKPKNGDGGP QQLKPVETGG SDQDNGPKSQ NDVGAAQPDN DNELKPQVNG | 360 |
| GGSIGGGAID GKPGNVDGTN KPDDIQGFAD DKSGSQQNTK PNGPGVDIRP EQVGPKSKNG | 420 |
| THAKPKKGTV GQVQTKPKSQ SESGPKHKAP KRPKGAVTIR PKQENSAPKH KAPKTTKPKT | 480 |
| TAPKTTKPKT TAPKTTKPKT TAPKTTKPKT TAPKTTKPKT TAPKTTKPKA VKPKNSAAVT | 540 |
| EACTVGSEEI QEAGNTLTDK QSAALVSDCV DNSQVVWSEP SDDPVLEWME DQVAEL | 596 |
Predicted 3D structure by AlphaFold2 with pLDDT = 54.93 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MSAVVPITLV ASAWGVAIAA TPGSDTIDAK VDSHSDHGTP PISDVPTDAF TKPSFGKVQK | 60 |
| HQSSLAPLAS FSKKQATPMA LKSSPLPSAA VSAYRDAAKV MANVKSACKL DWTLVAAIGR | 120 |
| VESDHGRYGG STLDTRGDSS PEIIGIPLNG SNNTAAIRDT DNGQFDGDTT WDRAVGPMQF | 180 |
| IPSTWNLVGV DGNGDGVKSP HNIYDAALAT AVYLCADNDD LSTKDGASAA VYSYNHSNEY | 240 |
| VANVLAIADR YKDGDFTEES TVYLPDTPDS DDELFDPDTY DPGPSNDDQA NQGNNSNQSG | 300 |
| GARNQLEPKT TKPKNGDGGP QQLKPVETGG SDQDNGPKSQ NDVGAAQPDN DNELKPQVNG | 360 |
| GGSIGGGAID GKPGNVDGTN KPDDIQGFAD DKSGSQQNTK PNGPGVDIRP EQVGPKSKNG | 420 |
| THAKPKKGTV GQVQTKPKSQ SESGPKHKAP KRPKGAVTIR PKQENSAPKH KAPKTTKPKT | 480 |
| TAPKTTKPKT TAPKTTKPKT TAPKTTKPKT TAPKTTKPKT TAPKTTKPKA VKPKNSAAVT | 540 |
| EACTVGSEEI QEAGNTLTDK QSAALVSDCV DNSQVVWSEP SDDPVLEWME DQVAEL | 596 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.