CAZyme3D

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Entry ID

Information for CAZyme ID: UPK73075.1

Basic Information

GenBank IDUPK73075.1
FamilyGH2
Sequence Length842
UniProt IDUPK73075.1(MOD)Download
Average pLDDT?92.57
CAZy50 ID23599
CAZy50 RepYes, UPK73075.1
Structure ClusterSC_GH2_clus103
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2933568
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
Genus
SpeciesNocardioidaceae bacterium SCSIO 66511

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRLRNGVIV  GASAAVAAAL  LSVAPSPASP  ESSAWEPKDP  ELTTPWTSAV  GPDNALPDYP60
RPQLRRAQWK  NLNGLWEFAA  AAEGDEPPVG  EELDERVLVP  YPIESALSGI  KRHEDRMFYR120
RTFKVPRNWQ  LNGRHGKRLL  LHFGAVDYDA  KVWINGDLAT  EHRGGFDHFT  VDATDHLHRR180
GPQEIVVGVN  DLTDGLKQPV  GKQRIPAIEN  PGGIFYTPAS  GIWQTVWMEP  VRAAHIEDVT240
ATTRKNLREV  DVTVDAAAAR  GQKVRLQARR  NGRVVARGEG  VPGKPIRLEI  RRPELWTPDH300
PNLYDLRVAL  YDRSGRRADK  ADSYFGMRTV  DSVVGKDGKR  HIVLNGEPTF  VNSTLDQGYW360
PDGIFTAPTD  EALAFDLKAH  KKLGFNAVRK  HIKVEPDRWY  YWADRLGLMV  WQDMPSMQNG420
RKPDPEQPAR  DQFEAELKTM  IDQHDGWTSI  IGWVPFNEGW  GEWDAEETGR  IADSVKAADP480
TRLVNAHSGY  NCCDSEGDSG  RGDIIDWHQY  TGPAAPSPTA  DRAAIDGEHG  GYGLVVDDHL540
WPGEPGAYQM  AESKQELTDL  YVRNQSRLLE  LSRKCGLSGG  IYTQITDVET  EVNGFFTYDR600
KVEKMFRGPV  RKINEKLSHS  GNLGPTPPDP  DDGTPGLDGI  HRWSLDDGSG  TTAADSVGDD660
DLAVQDGATW  AEGKAGKALA  LDGTGYADSD  GPVVDTQGSF  SVSAWVKLDE  TGGGFQTAVS720
QDGADASTFF  LQYDGGQNKF  AFSTLGGRAY  ADQTAEAGRW  YHLVGVRDAA  SGTYRLYVDG780
QPEGTLSQCL  GENSTGPLAV  GRAKYNGDNV  DFLGGAVDDV  RVYDRPLDDA  EVTELFEGAA840
SH842

Predicted 3D structure by AlphaFold2 with pLDDT = 92.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNRLRNGVIV  GASAAVAAAL  LSVAPSPASP  ESSAWEPKDP  ELTTPWTSAV  GPDNALPDYP60
RPQLRRAQWK  NLNGLWEFAA  AAEGDEPPVG  EELDERVLVP  YPIESALSGI  KRHEDRMFYR120
RTFKVPRNWQ  LNGRHGKRLL  LHFGAVDYDA  KVWINGDLAT  EHRGGFDHFT  VDATDHLHRR180
GPQEIVVGVN  DLTDGLKQPV  GKQRIPAIEN  PGGIFYTPAS  GIWQTVWMEP  VRAAHIEDVT240
ATTRKNLREV  DVTVDAAAAR  GQKVRLQARR  NGRVVARGEG  VPGKPIRLEI  RRPELWTPDH300
PNLYDLRVAL  YDRSGRRADK  ADSYFGMRTV  DSVVGKDGKR  HIVLNGEPTF  VNSTLDQGYW360
PDGIFTAPTD  EALAFDLKAH  KKLGFNAVRK  HIKVEPDRWY  YWADRLGLMV  WQDMPSMQNG420
RKPDPEQPAR  DQFEAELKTM  IDQHDGWTSI  IGWVPFNEGW  GEWDAEETGR  IADSVKAADP480
TRLVNAHSGY  NCCDSEGDSG  RGDIIDWHQY  TGPAAPSPTA  DRAAIDGEHG  GYGLVVDDHL540
WPGEPGAYQM  AESKQELTDL  YVRNQSRLLE  LSRKCGLSGG  IYTQITDVET  EVNGFFTYDR600
KVEKMFRGPV  RKINEKLSHS  GNLGPTPPDP  DDGTPGLDGI  HRWSLDDGSG  TTAADSVGDD660
DLAVQDGATW  AEGKAGKALA  LDGTGYADSD  GPVVDTQGSF  SVSAWVKLDE  TGGGFQTAVS720
QDGADASTFF  LQYDGGQNKF  AFSTLGGRAY  ADQTAEAGRW  YHLVGVRDAA  SGTYRLYVDG780
QPEGTLSQCL  GENSTGPLAV  GRAKYNGDNV  DFLGGAVDDV  RVYDRPLDDA  EVTELFEGAA840
SH842

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(65-511)+CBM40(753-833)

MNRLRNGVIV  GASAAVAAAL  LSVAPSPASP  ESSAWEPKDP  ELTTPWTSAV  GPDNALPDYP60
RPQLRRAQWK  NLNGLWEFAA  AAEGDEPPVG  EELDERVLVP  YPIESALSGI  KRHEDRMFYR120
RTFKVPRNWQ  LNGRHGKRLL  LHFGAVDYDA  KVWINGDLAT  EHRGGFDHFT  VDATDHLHRR180
GPQEIVVGVN  DLTDGLKQPV  GKQRIPAIEN  PGGIFYTPAS  GIWQTVWMEP  VRAAHIEDVT240
ATTRKNLREV  DVTVDAAAAR  GQKVRLQARR  NGRVVARGEG  VPGKPIRLEI  RRPELWTPDH300
PNLYDLRVAL  YDRSGRRADK  ADSYFGMRTV  DSVVGKDGKR  HIVLNGEPTF  VNSTLDQGYW360
PDGIFTAPTD  EALAFDLKAH  KKLGFNAVRK  HIKVEPDRWY  YWADRLGLMV  WQDMPSMQNG420
RKPDPEQPAR  DQFEAELKTM  IDQHDGWTSI  IGWVPFNEGW  GEWDAEETGR  IADSVKAADP480
TRLVNAHSGY  NCCDSEGDSG  RGDIIDWHQY  TGPAAPSPTA  DRAAIDGEHG  GYGLVVDDHL540
WPGEPGAYQM  AESKQELTDL  YVRNQSRLLE  LSRKCGLSGG  IYTQITDVET  EVNGFFTYDR600
KVEKMFRGPV  RKINEKLSHS  GNLGPTPPDP  DDGTPGLDGI  HRWSLDDGSG  TTAADSVGDD660
DLAVQDGATW  AEGKAGKALA  LDGTGYADSD  GPVVDTQGSF  SVSAWVKLDE  TGGGFQTAVS720
QDGADASTFF  LQYDGGQNKF  AFSTLGGRAY  ADQTAEAGRW  YHLVGVRDAA  SGTYRLYVDG780
QPEGTLSQCL  GENSTGPLAV  GRAKYNGDNV  DFLGGAVDDV  RVYDRPLDDA  EVTELFEGAA840
SH842

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help