CAZyme3D

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Entry ID

Information for CAZyme ID: UPK41209.1

Basic Information

GenBank IDUPK41209.1
FamilyCBM91, GH43_12
Sequence Length541
UniProt IDA0A1G6MG23(94.4,98.7)Download
Average pLDDT?95.22
CAZy50 ID61091
CAZy50 RepYes, UPK41209.1
Structure ClusterSC_CBM91_clus2, SC_GH43_clus6
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1472
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus pabuli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTFRNPVLP  GFHPDPSAIR  VGEDYYLVTS  SFEYFPGVPL  FHSKDLVHWQ  QLGHVLDRAS60
QLNLDGIIPS  RGIWAPTIRY  HNGTFYMITT  FVDNEKKEHN  FYVTTTDPSG  DWSDPIWLED120
APGIDPSLFF  DEDGRAYYTG  NRIPPEGQEY  PKHMDIWLQE  IDLEQGRLIG  EKVSIWQGAL180
KVAHAQEGPH  IYKKDSWYYL  LIAEGGTGHT  HAVTIARSRI  ITGPYEGHRA  NPILTHRHLG240
RAYPIVNVGH  AELIETQQGE  WWLLCLASRI  AGGYYRNLGR  ETFMAPVQWE  QEWPVVSPGV300
GRLELETRSP  NLPEVRWPSV  SIRDDFEESS  LSPIWNFLRT  PRGEFWSLTE  RPGYLRLRLK360
EELLTEQGNP  AFVGRRQQHL  MFNASTHMEF  NPQNEGETAG  LTLFHNQNYH  FRMELALEQG420
KPFIRLVERE  AGVDKLLSFH  PWSDDHIQMK  VVGHEQEYSF  YYRSNKCASW  EMLFEKADGR480
LLSTDRAGGF  TGTYIGLYGS  KQAKPNSNEA  LYQDGIHHNF  PFVDFDWFDY  KELQNSRNFN540
I541

Predicted 3D structure by AlphaFold2 with pLDDT = 95.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKTFRNPVLP  GFHPDPSAIR  VGEDYYLVTS  SFEYFPGVPL  FHSKDLVHWQ  QLGHVLDRAS60
QLNLDGIIPS  RGIWAPTIRY  HNGTFYMITT  FVDNEKKEHN  FYVTTTDPSG  DWSDPIWLED120
APGIDPSLFF  DEDGRAYYTG  NRIPPEGQEY  PKHMDIWLQE  IDLEQGRLIG  EKVSIWQGAL180
KVAHAQEGPH  IYKKDSWYYL  LIAEGGTGHT  HAVTIARSRI  ITGPYEGHRA  NPILTHRHLG240
RAYPIVNVGH  AELIETQQGE  WWLLCLASRI  AGGYYRNLGR  ETFMAPVQWE  QEWPVVSPGV300
GRLELETRSP  NLPEVRWPSV  SIRDDFEESS  LSPIWNFLRT  PRGEFWSLTE  RPGYLRLRLK360
EELLTEQGNP  AFVGRRQQHL  MFNASTHMEF  NPQNEGETAG  LTLFHNQNYH  FRMELALEQG420
KPFIRLVERE  AGVDKLLSFH  PWSDDHIQMK  VVGHEQEYSF  YYRSNKCASW  EMLFEKADGR480
LLSTDRAGGF  TGTYIGLYGS  KQAKPNSNEA  LYQDGIHHNF  PFVDFDWFDY  KELQNSRNFN540
I541

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_12(5-294)+CBM91(322-533)

MKTFRNPVLP  GFHPDPSAIR  VGEDYYLVTS  SFEYFPGVPL  FHSKDLVHWQ  QLGHVLDRAS60
QLNLDGIMPS  RGIWAPTIRY  HNGTFYMITT  FVDNEKKEHN  FYVTTTDPSG  DWSDPIWLDD120
APGIDPSLFF  DEDGRAYYTG  NRIPPEGQEY  PKHMDIWLQE  IDLEQGKLIG  EKVSIWQGAL180
KVAHAQEGPH  IYKKDDWYYL  LIAEGGTGHT  HAVTIARSRN  ITGPYEGHRS  NPILTHRHLG240
RAYPIVNVGH  AELIETQQGE  WWLLCLASRT  AGGYYRNLGR  ETFMAPVQWE  QEWPVVSPGV300
GRLELETRSP  NLPEVRWPST  PIRDDFEENS  LSPIWNFLRT  PRGEFWSVTE  RPGHLRLRLK360
QDQLTEQSNP  AFVGRRQQHL  MFNASTHMEF  NPQNEGETAG  LTLFHNQNYH  FRMELALEQG420
KPVIRVVERE  AGVDKLLISH  PWSDRHIQLK  VVGHEQEYSF  YYRANEYASW  DVLFEKADGR480
LLSTDRAGGF  TGTYIGLYGS  KQAKPNSNEA  LYQDGIHHDL  PFVDFDWFDY  DELQKK536

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help