CAZyme3D

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Entry ID

Information for CAZyme ID: UOB17148.1

Basic Information

GenBank IDUOB17148.1
FamilyGH2
Sequence Length838
UniProt IDA0A9E6ZQW9(100,100)Download
Average pLDDT?93.55
CAZy50 ID23914
CAZy50 RepYes, UOB17148.1
Structure ClusterSC_GH2_clus103
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2926907
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusAbyssalbus
SpeciesAbyssalbus ytuae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRNIFILIS  CLFYLRLFSQ  KTVLEDWEFS  LDNEPAAFCN  VKIPHTWNKN  DAFDDAGGYY60
RGIGTYKKKI  IIKDISKKYY  LHFKGSNQFT  TLWINNRKVG  EHRGGYTSFS  FDISDFIQKN120
ENEITITVNN  SHNEKIPPLD  ADFTFYGGIY  RSVYLVEENF  IHFKKHLGND  YVKTDAVVTK180
EKKGRVTIHA  VITNSENTQK  GGLHLSLISP  EGTVKTINKK  IKLQEGENKF  IIDYEIESPL240
LWSVQTPNLY  KLTAEILDKK  GLVQDSYSCN  IGFRTIQATT  KGFFLNGDYL  KLTGVNRHQD300
LEGYGNAVPV  HLQLDDLVKI  KEMGSNFLRL  AHYPQDEEIY  KAADSLGLIL  WSEIPVVNKV360
PLGNDYESYK  ENALLMQKEH  IFQNYNHPSF  VFVGYMNEIF  LRTVFDSPAE  ETKQQIVNNT420
LDLAGALEDL  TRKEAPGHIT  VMALHGNQIY  NETGIAQIPM  VIGWNLYFGW  YGGNIYDLGG480
FLDKENKKFP  NRPLIISEYG  VGADVRLHNE  NPEIFDFSEE  YQLDYHIGYW  NQVHERDFVI540
GMSAWNFADF  GSEFRGDAMP  HINQKGLVNF  NRIPKNIYYW  YKATMKPTEK  LTRIYRDLPV600
HLSNSPKKLL  KIISNQPVIV  KLNGNSIANE  SPLNNLINLE  INLVKGQNVI  EVYGRNDILL660
DKEIIEWKKP  LITNKGDLLA  INLGSKNYFK  DTENVIWYPV  TTSTGNIYLA  GNIKQVKTSA720
NVKGTSNDPV  YQYGLSGLNE  IKIEVPKGKY  EVKLLYANLL  KRKAIAYELK  TEKEPGEIIS780
KPIKFYVNNL  LVEIDTKEKL  TKFEKTIITE  VKNDQLQISS  ATSAPFTLSG  IMIKKIEL838

Predicted 3D structure by AlphaFold2 with pLDDT = 93.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSRNIFILIS  CLFYLRLFSQ  KTVLEDWEFS  LDNEPAAFCN  VKIPHTWNKN  DAFDDAGGYY60
RGIGTYKKKI  IIKDISKKYY  LHFKGSNQFT  TLWINNRKVG  EHRGGYTSFS  FDISDFIQKN120
ENEITITVNN  SHNEKIPPLD  ADFTFYGGIY  RSVYLVEENF  IHFKKHLGND  YVKTDAVVTK180
EKKGRVTIHA  VITNSENTQK  GGLHLSLISP  EGTVKTINKK  IKLQEGENKF  IIDYEIESPL240
LWSVQTPNLY  KLTAEILDKK  GLVQDSYSCN  IGFRTIQATT  KGFFLNGDYL  KLTGVNRHQD300
LEGYGNAVPV  HLQLDDLVKI  KEMGSNFLRL  AHYPQDEEIY  KAADSLGLIL  WSEIPVVNKV360
PLGNDYESYK  ENALLMQKEH  IFQNYNHPSF  VFVGYMNEIF  LRTVFDSPAE  ETKQQIVNNT420
LDLAGALEDL  TRKEAPGHIT  VMALHGNQIY  NETGIAQIPM  VIGWNLYFGW  YGGNIYDLGG480
FLDKENKKFP  NRPLIISEYG  VGADVRLHNE  NPEIFDFSEE  YQLDYHIGYW  NQVHERDFVI540
GMSAWNFADF  GSEFRGDAMP  HINQKGLVNF  NRIPKNIYYW  YKATMKPTEK  LTRIYRDLPV600
HLSNSPKKLL  KIISNQPVIV  KLNGNSIANE  SPLNNLINLE  INLVKGQNVI  EVYGRNDILL660
DKEIIEWKKP  LITNKGDLLA  INLGSKNYFK  DTENVIWYPV  TTSTGNIYLA  GNIKQVKTSA720
NVKGTSNDPV  YQYGLSGLNE  IKIEVPKGKY  EVKLLYANLL  KRKAIAYELK  TEKEPGEIIS780
KPIKFYVNNL  LVEIDTKEKL  TKFEKTIITE  VKNDQLQISS  ATSAPFTLSG  IMIKKIEL838

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(25-590)+CBM57(679-764)

MSRNIFILIS  CLFYLRLFSQ  KTVLEDWEFS  LDNEPAAFCN  VKIPHTWNKN  DAFDDAGGYY60
RGIGTYKKKI  IIKDISKKYY  LHFKGSNQFT  TLWINNRKVG  EHRGGYTSFS  FDISDFIQKN120
ENEITITVNN  SHNEKIPPLD  ADFTFYGGIY  RSVYLVEENF  IHFKKHLGND  YVKTDAVVTK180
EKKGRVTIHA  VITNSENTQK  GGLHLSLISP  EGTVKTINKK  IKLQEGENKF  IIDYEIESPL240
LWSVQTPNLY  KLTAEILDKK  GLVQDSYSCN  IGFRTIQATT  KGFFLNGDYL  KLTGVNRHQD300
LEGYGNAVPV  HLQLDDLVKI  KEMGSNFLRL  AHYPQDEEIY  KAADSLGLIL  WSEIPVVNKV360
PLGNDYESYK  ENALLMQKEH  IFQNYNHPSF  VFVGYMNEIF  LRTVFDSPAE  ETKQQIVNNT420
LDLAGALEDL  TRKEAPGHIT  VMALHGNQIY  NETGIAQIPM  VIGWNLYFGW  YGGNIYDLGG480
FLDKENKKFP  NRPLIISEYG  VGADVRLHNE  NPEIFDFSEE  YQLDYHIGYW  NQVHERDFVI540
GMSAWNFADF  GSEFRGDAMP  HINQKGLVNF  NRIPKNIYYW  YKATMKPTEK  LTRIYRDLPV600
HLSNSPKKLL  KIISNQPVIV  KLNGNSIANE  SPLNNLINLE  INLVKGQNVI  EVYGRNDILL660
DKEIIEWKKP  LITNKGDLLA  INLGSKNYFK  DTENVIWYPV  TTSTGNIYLA  GNIKQVKTSA720
NVKGTSNDPV  YQYGLSGLNE  IKIEVPKGKY  EVKLLYANLL  KRKAIAYELK  TEKEPGEIIS780
KPIKFYVNNL  LVEIDTKEKL  TKFEKTIITE  VKNDQLQISS  ATSAPFTLSG  IMIKKIEL838

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help