CAZyme3D

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Entry ID

Information for CAZyme ID: UNK18308.1

Basic Information

GenBank IDUNK18308.1
FamilyGH126
Sequence Length374
UniProt IDUNK18308.1(MOD)Download
Average pLDDT?93.59
CAZy50 ID116706
CAZy50 RepYes, UNK18308.1
Structure ClusterSC_GH126_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2925845
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. N3/727

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKTVQNRTK  LVITKVIASA  LAGAILLFIW  LYPNKETSAM  TVTFIEKHMK  NDNSTLATYL60
KEASSEHPDT  VAGREALSES  IGLWMQYTVL  SGDQDKFDES  VTLLETYYLS  PQKYIHWKLH120
PNGQPAASTN  ALGDDLRIID  ALLKAFTRWG  QDHYLNLAQE  IGSTLQTSVQ  KNGYFVDFHD180
FKRDESTDVL  SLVYVDISAL  QAMRSYGIIS  EQDYKKYEDL  LISIPNDGTF  YPKTYQVSTN240
QYGYDTSVNM  IDQLIVGIHL  AEMNHPPKQL  IEFMKEQFRK  NMQLMGRYNR  ETRKPDVAYE300
SPAVYGLAII  LALKCDDTAW  AKQLNNRMIQ  FRSQDTAYPG  GYVFNGNTHI  FDNLFPLLAE360
KSLENKKKEI  RKKK374

Predicted 3D structure by AlphaFold2 with pLDDT = 93.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKTVQNRTK  LVITKVIASA  LAGAILLFIW  LYPNKETSAM  TVTFIEKHMK  NDNSTLATYL60
KEASSEHPDT  VAGREALSES  IGLWMQYTVL  SGDQDKFDES  VTLLETYYLS  PQKYIHWKLH120
PNGQPAASTN  ALGDDLRIID  ALLKAFTRWG  QDHYLNLAQE  IGSTLQTSVQ  KNGYFVDFHD180
FKRDESTDVL  SLVYVDISAL  QAMRSYGIIS  EQDYKKYEDL  LISIPNDGTF  YPKTYQVSTN240
QYGYDTSVNM  IDQLIVGIHL  AEMNHPPKQL  IEFMKEQFRK  NMQLMGRYNR  ETRKPDVAYE300
SPAVYGLAII  LALKCDDTAW  AKQLNNRMIQ  FRSQDTAYPG  GYVFNGNTHI  FDNLFPLLAE360
KSLENKKKEI  RKKK374

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH126(41-359)

MKKTVQNRTK  LVITKVIASA  LAGAILLFIW  LYPNKETSAM  TVTFIEKHMK  NDNSTLATYL60
KEASSEHPDT  VAGREALSES  IGLWMQYTVL  SGDQDKFDES  VTLLETYYLS  PQKYIHWKLH120
PNGQPAASTN  ALGDDLRIID  ALLKAFTRWG  QDHYLNLAQE  IGSTLQTSVQ  KNGYFVDFHD180
FKRDESTDVL  SLVYVDISAL  QAMRSYGIIS  EQDYKKYEDL  LISIPNDGTF  YPKTYQVSTN240
QYGYDTSVNM  IDQLIVGIHL  AEMNHPPKQL  IEFMKEQFRK  NMQLMGRYNR  ETRKPDVAYE300
SPAVYGLAII  LALKCDDTAW  AKQLNNRMIQ  FRSQDTAYPG  GYVFNGNTHI  FDNLFPLLAE360
KSLENKKKEI  RKKK374

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help