CAZyme3D

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Entry ID

Information for CAZyme ID: UNJ30811.1

Basic Information

GenBank IDUNJ30811.1
FamilyGH5_5
Sequence Length510
UniProt IDUNJ30811.1(MOD)Download
Average pLDDT?79.25
CAZy50 ID66882
CAZy50 RepYes, UNJ30811.1
Structure ClusterSC_GH5_clus299
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1310165
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusRalstonia
SpeciesRalstonia pseudosolanacearum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQDLRAAHAG  PYIFIFPQNP  THPGFTKIFL  LDVGVLHFQD  AAHANRFRLH  PAWNACPPGT60
HLLTNLEMTA  KLRIPHFKRV  YTYGVLAMAC  TTVTLLTACG  GGDADTAATP  QSATDSAVLK120
TAAISTAAAA  SSSTASVWLT  VAKENATFAV  SGTQTLRFGA  GSTWVQKSVT  GNGQCTVAFF180
GQDPLVGVGK  VCQQLQGTGS  LLWRGVSLAG  AEFGAGSLPG  NYGSDYLYPS  ADSVTYYKNK240
GMNIVRLPFL  WERLQPTLNQ  PFDATELSRL  TNFVKTVTLT  GETVLLDPHN  YARYRGNLIG300
SGAVPESAYA  DFWRRLASQF  KGNARVIFGL  MNEPNSMPTE  QWLSAANAAL  AAIRSAHASN360
VVFVPGNAWT  GAHSWNESWY  GTPNGTVMKD  INDPGHNLVF  EVHQYLDGDS  SGQSADCVSA420
TVGTERLQDF  TNWLRTNGYR  GFLGEIGAGA  NDTCNQAIGN  TLAFLRSNAD  VWTGWSWWAG480
GPLWGNYMYS  IEPSNGVDKP  QMSVLTQYLH  510

Predicted 3D structure by AlphaFold2 with pLDDT = 79.25 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQDLRAAHAG  PYIFIFPQNP  THPGFTKIFL  LDVGVLHFQD  AAHANRFRLH  PAWNACPPGT60
HLLTNLEMTA  KLRIPHFKRV  YTYGVLAMAC  TTVTLLTACG  GGDADTAATP  QSATDSAVLK120
TAAISTAAAA  SSSTASVWLT  VAKENATFAV  SGTQTLRFGA  GSTWVQKSVT  GNGQCTVAFF180
GQDPLVGVGK  VCQQLQGTGS  LLWRGVSLAG  AEFGAGSLPG  NYGSDYLYPS  ADSVTYYKNK240
GMNIVRLPFL  WERLQPTLNQ  PFDATELSRL  TNFVKTVTLT  GETVLLDPHN  YARYRGNLIG300
SGAVPESAYA  DFWRRLASQF  KGNARVIFGL  MNEPNSMPTE  QWLSAANAAL  AAIRSAHASN360
VVFVPGNAWT  GAHSWNESWY  GTPNGTVMKD  INDPGHNLVF  EVHQYLDGDS  SGQSADCVSA420
TVGTERLQDF  TNWLRTNGYR  GFLGEIGAGA  NDTCNQAIGN  TLAFLRSNAD  VWTGWSWWAG480
GPLWGNYMYS  IEPSNGVDKP  QMSVLTQYLH  510

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(203-488)

MQDLRAAHAG  PYIFIFPQNP  THPGFTKIFL  LDVGVLHFQD  AAHANRFRLH  PAWNACPPGT60
HLLTNLEMTA  KLRIPHFKRV  YTYGVLAMAC  TTVTLLTACG  GGDADTAATP  QSATDSAVLK120
TAAISTAAAA  SSSTASVWLT  VAKENATFAV  SGTQTLRFGA  GSTWVQKSVT  GNGQCTVAFF180
GQDPLVGVGK  VCQQLQGTGS  LLWRGVSLAG  AEFGAGSLPG  NYGSDYLYPS  ADSVTYYKNK240
GMNIVRLPFL  WERLQPTLNQ  PFDATELSRL  TNFVKTVTLT  GETVLLDPHN  YARYRGNLIG300
SGAVPESAYA  DFWRRLASQF  KGNARVIFGL  MNEPNSMPTE  QWLSAANAAL  AAIRSAHASN360
VVFVPGNAWT  GAHSWNESWY  GTPNGTVMKD  INDPGHNLVF  EVHQYLDGDS  SGQSADCVSA420
TVGTERLQDF  TNWLRTNGYR  GFLGEIGAGA  NDTCNQAIGN  TLAFLRSNAD  VWTGWSWWAG480
GPLWGNYMYS  IEPSNGVDKP  QMSVLTQYLH  510

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help