CAZyme3D

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Entry ID

Information for CAZyme ID: UNG40325.1

Basic Information

GenBank IDUNG40325.1
FamilyGH5_2
Sequence Length340
UniProt IDUNG40325.1(MOD)Download
Average pLDDT?91.95
CAZy50 ID137208
CAZy50 RepYes, UNG40325.1
Structure ClusterSC_GH5_clus305
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1586533
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderColeoptera
FamilyCerambycidae
GenusRhagium
SpeciesRhagium bifasciatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MENMKHENNF  RVLVMNPSFI  LTLLVVVSCS  IDIAVSNDAL  YETVSKHGQL  SVVGTQIVNQ60
NGSPVQLKGV  GLAWSIWWSQ  YYNAATVRGV  HVGCHSNIIR  AALSVGTNDG  GYLRDPAGQL120
ALIETVIEAA  IQQDMYVLVD  WHEVDNDIHL  SEAKVFFDTI  SKKYGRYPNI  IYETYNEPVQ180
ISWSQILKPY  HEAVIATIRA  NDPNNIIVLG  TPNYSQQVDQ  AAADPVTSSK  NIMYTLHYYA240
GTHKQWLRDT  AQGALDKGLP  IFVTEYGTVN  ADATGPIDYA  ESQLWWDWLD  RNYMSYVNYD300
ISDKPSEDAS  VLVPGTTPDQ  VCQEAYLTTS  GKLVVAQNSK  340

Predicted 3D structure by AlphaFold2 with pLDDT = 91.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MENMKHENNF  RVLVMNPSFI  LTLLVVVSCS  IDIAVSNDAL  YETVSKHGQL  SVVGTQIVNQ60
NGSPVQLKGV  GLAWSIWWSQ  YYNAATVRGV  HVGCHSNIIR  AALSVGTNDG  GYLRDPAGQL120
ALIETVIEAA  IQQDMYVLVD  WHEVDNDIHL  SEAKVFFDTI  SKKYGRYPNI  IYETYNEPVQ180
ISWSQILKPY  HEAVIATIRA  NDPNNIIVLG  TPNYSQQVDQ  AAADPVTSSK  NIMYTLHYYA240
GTHKQWLRDT  AQGALDKGLP  IFVTEYGTVN  ADATGPIDYA  ESQLWWDWLD  RNYMSYVNYD300
ISDKPSEDAS  VLVPGTTPDQ  VCQEAYLTTS  GKLVVAQNSK  340

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_2(60-298)

MENMKHENNF  RVLVMNPSFI  LTLLVVVSCS  IDIAVSNDAL  YETVSKHGQL  SVVGTQIVNQ60
NGSPVQLKGV  GLAWSIWWSQ  YYNAATVRGV  HVGCHSNIIR  AALSVGTNDG  GYLRDPAGQL120
ALIETVIEAA  IQQDMYVLVD  WHEVDNDIHL  SEAKVFFDTI  SKKYGRYPNI  IYETYNEPVQ180
ISWSQILKPY  HEAVIATIRA  NDPNNIIVLG  TPNYSQQVDQ  AAADPVTSSK  NIMYTLHYYA240
GTHKQWLRDT  AQGALDKGLP  IFVTEYGTVN  ADATGPIDYA  ESQLWWDWLD  RNYMSYVNYD300
ISDKPSEDAS  VLVPGTTPDQ  VCQEAYLTTS  GKLVVAQNSK  340

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help