CAZyme3D

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Entry ID

Information for CAZyme ID: UNE48416.1

Basic Information

GenBank IDUNE48416.1
FamilyGH174
Sequence Length646
UniProt IDA0A8J2V6Z1(100,100)Download
Average pLDDT?88.31
CAZy50 ID45885
CAZy50 RepYes, UNE48416.1
Structure ClusterSC_GH174_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1526572
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderParvularculales
FamilyParvularculaceae
GenusAquisalinus
SpeciesAquisalinus flavus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKSIRLSVG  AGIAALLAGP  AMAQDPRLEN  VLPDSPFATV  LGGTHSETDT  YSSSGSSWWL60
NWGEDHVFQH  RLSHDNSDNS  KDWDIRIGKG  GQVYSFISQS  GEIMPPQYRG  TSEGPAGHAK120
EWAPWIDEVW  QTVAVNTTLN  NTFKPIGYPY  FMHGSGVYLK  DNSYLTEPFY  NPALVNGTIT180
ESNSYVTAHW  MNQAHIPSYH  PSHAISYYKY  RDVGDGIIEV  TAAVYNFSDN  ELNFFNFPWG240
GARTSEFGEY  QIMQSGSLVS  KTSGGFADPY  SYADSDGWVL  FTDKNSSDGN  TLGLVFGGDK300
SPRPSWQPAP  SLMRIGFAGG  TSGGTNDTNW  RNYMVAEGIR  RINLPVGKGA  WVRYYFVVGD360
RVDVLAAIED  NDLAAKTDYG  LLDFSETDAD  LIAWYGDEDG  PVSTDSSAGD  LQFRLYAQPV420
NDSVPLFRVE  APTGESFITT  NPYTLTEPYG  VDEILRPYDG  TADGWELLGY  AMPAGSASTP480
PSGYVYQALS  EIVTPSLFKF  DGVDVDVLVS  SAASPVYTIT  QVQAHGSNLR  QFATDVELSP540
ATGTAHQWKY  VPLSDGTYKI  VNAWDGKRLS  ANSNTDVEVV  ADSGSVPDTD  RWYLKPVDGD600
LTRFRIENKN  YQRWLIGYPD  SQGNIVRLDE  TSKLGTWTRW  KIYDVN646

Predicted 3D structure by AlphaFold2 with pLDDT = 88.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKSIRLSVG  AGIAALLAGP  AMAQDPRLEN  VLPDSPFATV  LGGTHSETDT  YSSSGSSWWL60
NWGEDHVFQH  RLSHDNSDNS  KDWDIRIGKG  GQVYSFISQS  GEIMPPQYRG  TSEGPAGHAK120
EWAPWIDEVW  QTVAVNTTLN  NTFKPIGYPY  FMHGSGVYLK  DNSYLTEPFY  NPALVNGTIT180
ESNSYVTAHW  MNQAHIPSYH  PSHAISYYKY  RDVGDGIIEV  TAAVYNFSDN  ELNFFNFPWG240
GARTSEFGEY  QIMQSGSLVS  KTSGGFADPY  SYADSDGWVL  FTDKNSSDGN  TLGLVFGGDK300
SPRPSWQPAP  SLMRIGFAGG  TSGGTNDTNW  RNYMVAEGIR  RINLPVGKGA  WVRYYFVVGD360
RVDVLAAIED  NDLAAKTDYG  LLDFSETDAD  LIAWYGDEDG  PVSTDSSAGD  LQFRLYAQPV420
NDSVPLFRVE  APTGESFITT  NPYTLTEPYG  VDEILRPYDG  TADGWELLGY  AMPAGSASTP480
PSGYVYQALS  EIVTPSLFKF  DGVDVDVLVS  SAASPVYTIT  QVQAHGSNLR  QFATDVELSP540
ATGTAHQWKY  VPLSDGTYKI  VNAWDGKRLS  ANSNTDVEVV  ADSGSVPDTD  RWYLKPVDGD600
LTRFRIENKN  YQRWLIGYPD  SQGNIVRLDE  TSKLGTWTRW  KIYDVN646

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM13(533-642)

MKKSIRLSVG  AGIAALLAGP  AMAQDPRLEN  VLPDSPFATV  LGGTHSETDT  YSSSGSSWWL60
NWGEDHVFQH  RLSHDNSDNS  KDWDIRIGKG  GQVYSFISQS  GEIMPPQYRG  TSEGPAGHAK120
EWAPWIDEVW  QTVAVNTTLN  NTFKPIGYPY  FMHGSGVYLK  DNSYLTEPFY  NPALVNGTIT180
ESNSYVTAHW  MNQAHIPSYH  PSHAISYYKY  RDVGDGIIEV  TAAVYNFSDN  ELNFFNFPWG240
GARTSEFGEY  QIMQSGSLVS  KTSGGFADPY  SYADSDGWVL  FTDKNSSDGN  TLGLVFGGDK300
SPRPSWQPAP  SLMRIGFAGG  TSGGTNDTNW  RNYMVAEGIR  RINLPVGKGA  WVRYYFVVGD360
RVDVLAAIED  NDLAAKTDYG  LLDFSETDAD  LIAWYGDEDG  PVSTDSSAGD  LQFRLYAQPV420
NDSVPLFRVE  APTGESFITT  NPYTLTEPYG  VDEILRPYDG  TADGWELLGY  AMPAGSASTP480
PSGYVYQALS  EIVTPSLFKF  DGVDVDVLVS  SAASPVYTIT  QVQAHGSNLR  QFATDVELSP540
ATGTAHQWKY  VPLSDGTYKI  VNAWDGKRLS  ANSNTDVEVV  ADSGSVPDTD  RWYLKPVDGD600
LTRFRIENKN  YQRWLIGYPD  SQGNIVRLDE  TSKLGTWTRW  KIYDVN646

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help