Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: UMB54103.1
Basic Information
| GenBank ID | UMB54103.1 |
| Family | PL40 |
| Sequence Length | 1279 |
| UniProt ID | UMB54103.1(MOD) |
| Average pLDDT? | 88.88 |
| CAZy50 ID | 6464 |
| CAZy50 Rep | Yes, UMB54103.1 |
| Structure Cluster | SC_PL40_clus4 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2918526 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Lutibacter |
| Species | Lutibacter sp. A64 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MIKKVLLISL LIGFSTSVHT QIFMQDFCAS NTVSDYVSAT PNVGQFNKIS SSSANLATSI | 60 |
| NNGALSFKRT GAASMYAYRN FTFSTNPTFV QLKLDFEGSN FQTGTQNPVF SVYIGNGFSS | 120 |
| ASFGSNSTYA SRFGIIAGAN ANEFKVGTVD NIGGAPSSAV FTGKQTITFV VNNSGEDKSY | 180 |
| TAPNGSIETV ANGTMNLWVG GSREINDFSL KNTDAKGDIS GFKIQATSAS GLGTFDFDNI | 240 |
| EMKDLENEVV TPPTINLPDT PVDYLTLKHP FIWASYPERQ HIIDNIHQYG WASSLYNQLK | 300 |
| ARVDYNKNTH SVNPEVILNT IPAIPGVFDD RANHTEIVGS MTEAAILYYL TNDASYAQYA | 360 |
| ADILGHYMKY LAVQPVQKYQ EGTDGLMFDD GWLESRTLFP RIALTYDFLY NYINNNANTV | 420 |
| YDLATNARKQ FDDNEAQTTV TNLADIVFMS IRAKKSNHSV LAGNGALFNL LMIADDTKRE | 480 |
| QYFERFYNNT SESFDAYTWS LNNFTENGVW PETFSYSKGS HELVIQSLNV IDRYKPSLDI | 540 |
| VNNNLSILDG FIGYANWFFP SNELMHFGDS GIDGDMNKGY RWILKIASRK NLSNYEQLAK | 600 |
| QNLKFYYDQS GGYVPQIEDE RLEFNSPLQL LWGENIASSQ EAVAPKIEDT YNLKHAGIVV | 660 |
| QRNLNTPDIE NDGLMYYSGG AAYVHTHSTG IDLNLYGKGQ VTGTESGSGQ YGTDEHENYR | 720 |
| VRHASHNTVI ANGSGKRGGS NWLTKVATVD LVASEPKSLG TAIANDFSFS TQFIDDSFND | 780 |
| CLQQRTNSII RTSATTGYYC DILRSKGKTK NDYHDYIYHN IGDAVSLKFN DNSNVSLSAS | 840 |
| TKYSAEIADN VTGWTFFENV NSSSETNKGI KASFALNEVN KYMNVVIPGG VNREYATALS | 900 |
| PYTKGAIKGY DEKKTPVITM RKYGEAWDEP FIAIYEPSNS QESTIKSTTT IIENDKVVGV | 960 |
| KVVSEVNGAK ITDFILSNDE DETILNLENF KINFTGRFGI VRLKVKDGKT AVSLYLGEGQ | 1020 |
| ELTFDGETLN ADSEGKGFIE YTLEYEYGFE LSSNNFLIET ISETCAGKNN GSFTIEAVEK | 1080 |
| RNYIATINGS NYNFTDIVTI DNLSPGTYDL CITIEGETFE QCYQVIIAAG FSLSGKIKVD | 1140 |
| NKTASISILE GTAPYIVFKN GKTVLETYQP NFSIEIKHGD KLQVMSKLAC QETLSKQIDL | 1200 |
| LEGLYPYPNP SNGLFEMYIP TNLKTISIEI YNVQSQSISS KSYLVNNGKV HLDISNKPKG | 1260 |
| MYFVKVNLDK PLFVKVVKN | 1279 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.88 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MIKKVLLISL LIGFSTSVHT QIFMQDFCAS NTVSDYVSAT PNVGQFNKIS SSSANLATSI | 60 |
| NNGALSFKRT GAASMYAYRN FTFSTNPTFV QLKLDFEGSN FQTGTQNPVF SVYIGNGFSS | 120 |
| ASFGSNSTYA SRFGIIAGAN ANEFKVGTVD NIGGAPSSAV FTGKQTITFV VNNSGEDKSY | 180 |
| TAPNGSIETV ANGTMNLWVG GSREINDFSL KNTDAKGDIS GFKIQATSAS GLGTFDFDNI | 240 |
| EMKDLENEVV TPPTINLPDT PVDYLTLKHP FIWASYPERQ HIIDNIHQYG WASSLYNQLK | 300 |
| ARVDYNKNTH SVNPEVILNT IPAIPGVFDD RANHTEIVGS MTEAAILYYL TNDASYAQYA | 360 |
| ADILGHYMKY LAVQPVQKYQ EGTDGLMFDD GWLESRTLFP RIALTYDFLY NYINNNANTV | 420 |
| YDLATNARKQ FDDNEAQTTV TNLADIVFMS IRAKKSNHSV LAGNGALFNL LMIADDTKRE | 480 |
| QYFERFYNNT SESFDAYTWS LNNFTENGVW PETFSYSKGS HELVIQSLNV IDRYKPSLDI | 540 |
| VNNNLSILDG FIGYANWFFP SNELMHFGDS GIDGDMNKGY RWILKIASRK NLSNYEQLAK | 600 |
| QNLKFYYDQS GGYVPQIEDE RLEFNSPLQL LWGENIASSQ EAVAPKIEDT YNLKHAGIVV | 660 |
| QRNLNTPDIE NDGLMYYSGG AAYVHTHSTG IDLNLYGKGQ VTGTESGSGQ YGTDEHENYR | 720 |
| VRHASHNTVI ANGSGKRGGS NWLTKVATVD LVASEPKSLG TAIANDFSFS TQFIDDSFND | 780 |
| CLQQRTNSII RTSATTGYYC DILRSKGKTK NDYHDYIYHN IGDAVSLKFN DNSNVSLSAS | 840 |
| TKYSAEIADN VTGWTFFENV NSSSETNKGI KASFALNEVN KYMNVVIPGG VNREYATALS | 900 |
| PYTKGAIKGY DEKKTPVITM RKYGEAWDEP FIAIYEPSNS QESTIKSTTT IIENDKVVGV | 960 |
| KVVSEVNGAK ITDFILSNDE DETILNLENF KINFTGRFGI VRLKVKDGKT AVSLYLGEGQ | 1020 |
| ELTFDGETLN ADSEGKGFIE YTLEYEYGFE LSSNNFLIET ISETCAGKNN GSFTIEAVEK | 1080 |
| RNYIATINGS NYNFTDIVTI DNLSPGTYDL CITIEGETFE QCYQVIIAAG FSLSGKIKVD | 1140 |
| NKTASISILE GTAPYIVFKN GKTVLETYQP NFSIEIKHGD KLQVMSKLAC QETLSKQIDL | 1200 |
| LEGLYPYPNP SNGLFEMYIP TNLKTISIEI YNVQSQSISS KSYLVNNGKV HLDISNKPKG | 1260 |
| MYFVKVNLDK PLFVKVVKN | 1279 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.