CAZyme3D

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Entry ID

Information for CAZyme ID: UKS24105.1

Basic Information

GenBank IDUKS24105.1
FamilyCBM13, CBM32, CBM51, GH29
Sequence Length1722
UniProt IDUKS24105.1(MOD)Download
Average pLDDT?84.40
CAZy50 ID2518
CAZy50 RepYes, UKS24105.1
Structure ClusterSC_CBM13_clus30, SC_CBM13_clus44, SC_CBM32_clus20, SC_CBM32_clus47, SC_CBM32_clus61, SC_CBM51_clus26, SC_CBM51_clus7, SC_CBM51_clus9, SC_GH29_clus100
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1306526
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. HWE-109

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MCKKISTCVG  LIFMLLFVTV  APVFASTNIQ  STASPVVNDS  YTNQKNYVDL  RFGMFIHYNM60
GTYHDQEWVT  PGQDPLSFNP  EHVNTDQWAQ  AAESAGIKYT  VLTTKHHDGF  ALWPTKYGNY120
NVMNSSYKKD  IVRQYVDSMR  AKGILPGLYF  SIWDRQQGIQ  KGSVSRADIE  FIKGQLTELL180
TNYGEIPVLI  IDGWAWEMGH  NEVPYQEIRE  LIKRLQPNIL  IVDHNGQTQP  WDEDIIYFEE240
PKGVWAPSNN  AYAANQGMPL  VSSQWFWHNW  MTNTEPASVQ  NIVQDHLGFL  EPRYTNFLLN300
VSPNPDGELD  NNVVNRLGEI  GQAWSPNASR  PPLPGQPIVM  EHPITANSAT  ATSGNASNAI360
DGLMDYVNDT  YSETVWQTNT  SLPQSITFDL  GYTYNNINML  NYLPSQNLSE  GMITSYTLYV420
SEDGTNFTSV  TSGTWDGDKT  MKRVTFPSQT  ARYVKMEVNS  AVGGFAAAGE  LAVGSYTNEV480
PTRTGIDSFD  VNTLYRIVNK  ATGKVLGVGN  SPANGAAVAE  RTQSGALDQQ  WVIDDVGLGK540
YKIANKQSGQ  VMDVPGASKT  PEVPVIQWTD  SETAADPTAI  NQQWTISNVG  NGYFKITNVN600
SRLALEISNG  SAADGNPVVQ  NTYTGSDSQL  WKVEKLPSLI  KNVKVNGVSV  KGLNSENRTA660
TLTVLREKNL  EVPTVTADKA  SEDVQLVIHP  ADSLPGATTI  TATADGGATQ  EVYTLNFELV720
DRYASDLEWL  SASSGWLTVK  KDKSLDGNTI  RLMGNSGAAT  YEKGFGVHAE  SRIIFDISDK780
NYESFTALAG  VDQEMAKSPS  YADVEFKVLV  DGVEKFASGV  MKVTDLAKAV  DVNVVGASVV840
ELVVTKSDND  NSEDHASWAN  ATFRIAEGKS  EQKEELPEVD  YLSDLNWISA  SSGWLDVKKD900
KSIAGNAIVL  KNGAEDLSFA  KGLGTHANST  IKYDLTGANY  ETFSAFIGVD  KEVNGGSYKG960
NGSIQFKVSG  VKNDDTIESL  YSGSLLRVSD  DAKFVKVNVK  GYKELILEVT  DSGNGNSEDH1020
GDWANAKLTK  LNVEATPVIS  GVMPVNVVTA  TYVPPVLPAS  VTVVYNNATT  ADKSVQWDLV1080
DSSKYKSAGS  FIVNGAVDGT  VIPAVANVTV  TENTYRADLV  ALIANAQVQY  DFAVVGTAVG1140
NYPASSKSTL  QAAIAHAQQL  VDLNAATKQE  FEAETAALNT  ALQTFVLTKI  GQVNVQSITV1200
TNSTTTISVK  GGSLQLQAAV  LPANAVNKSV  TWAVYEADGR  TPTDKAIIDV  NGLLVAAKDG1260
IVKVVATAND  GSQIFGNKII  TISGQNDNPG  VNPGSGSSSG  SGNPTTSPVK  EDPTKYVPKD1320
TELRVEPVQE  NQTGVTATID  RDRLVQKLAD  LKAASSSNLN  FELPGVYERN  AVQLPLDILY1380
NSLKESKGTV  LTLRNHLGSY  NLPLSILNRE  DVASAVDTEG  AVLIIRMDKA  KSQHELQFDQ1440
SITENGMKRV  SDMIDYKVIL  KSKDKEVEIT  NFGNSFITRM  MNVDGVIQDS  SIATAVVYDQ1500
ATGEMKFVPS  VFTVKDGKTE  ATITRNTNSL  YAIVQHKKTF  DDMNGHWAQK  DVESLASKMV1560
IDGTTDHTYT  PEMQVTRTQF  AALLVRGLGL  RAETTPSVFT  DVSDNQWYAS  EVGTAAKYGL1620
VQGVGEGRFN  PDQLITREQM  VVMMMKAAHL  VQGELKPEAG  TNIQFSDQDQ  LSDYARSAVA1680
EAASKGLVHG  KTETTFAPQE  AATRAEAAVL  IKQAMQYLKL  IN1722

Predicted 3D structure by AlphaFold2 with pLDDT = 84.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MCKKISTCVG  LIFMLLFVTV  APVFASTNIQ  STASPVVNDS  YTNQKNYVDL  RFGMFIHYNM60
GTYHDQEWVT  PGQDPLSFNP  EHVNTDQWAQ  AAESAGIKYT  VLTTKHHDGF  ALWPTKYGNY120
NVMNSSYKKD  IVRQYVDSMR  AKGILPGLYF  SIWDRQQGIQ  KGSVSRADIE  FIKGQLTELL180
TNYGEIPVLI  IDGWAWEMGH  NEVPYQEIRE  LIKRLQPNIL  IVDHNGQTQP  WDEDIIYFEE240
PKGVWAPSNN  AYAANQGMPL  VSSQWFWHNW  MTNTEPASVQ  NIVQDHLGFL  EPRYTNFLLN300
VSPNPDGELD  NNVVNRLGEI  GQAWSPNASR  PPLPGQPIVM  EHPITANSAT  ATSGNASNAI360
DGLMDYVNDT  YSETVWQTNT  SLPQSITFDL  GYTYNNINML  NYLPSQNLSE  GMITSYTLYV420
SEDGTNFTSV  TSGTWDGDKT  MKRVTFPSQT  ARYVKMEVNS  AVGGFAAAGE  LAVGSYTNEV480
PTRTGIDSFD  VNTLYRIVNK  ATGKVLGVGN  SPANGAAVAE  RTQSGALDQQ  WVIDDVGLGK540
YKIANKQSGQ  VMDVPGASKT  PEVPVIQWTD  SETAADPTAI  NQQWTISNVG  NGYFKITNVN600
SRLALEISNG  SAADGNPVVQ  NTYTGSDSQL  WKVEKLPSLI  KNVKVNGVSV  KGLNSENRTA660
TLTVLREKNL  EVPTVTADKA  SEDVQLVIHP  ADSLPGATTI  TATADGGATQ  EVYTLNFELV720
DRYASDLEWL  SASSGWLTVK  KDKSLDGNTI  RLMGNSGAAT  YEKGFGVHAE  SRIIFDISDK780
NYESFTALAG  VDQEMAKSPS  YADVEFKVLV  DGVEKFASGV  MKVTDLAKAV  DVNVVGASVV840
ELVVTKSDND  NSEDHASWAN  ATFRIAEGKS  EQKEELPEVD  YLSDLNWISA  SSGWLDVKKD900
KSIAGNAIVL  KNGAEDLSFA  KGLGTHANST  IKYDLTGANY  ETFSAFIGVD  KEVNGGSYKG960
NGSIQFKVSG  VKNDDTIESL  YSGSLLRVSD  DAKFVKVNVK  GYKELILEVT  DSGNGNSEDH1020
GDWANAKLTK  LNVEATPVIS  GVMPVNVVTA  TYVPPVLPAS  VTVVYNNATT  ADKSVQWDLV1080
DSSKYKSAGS  FIVNGAVDGT  VIPAVANVTV  TENTYRADLV  ALIANAQVQY  DFAVVGTAVG1140
NYPASSKSTL  QAAIAHAQQL  VDLNAATKQE  FEAETAALNT  ALQTFVLTKI  GQVNVQSITV1200
TNSTTTISVK  GGSLQLQAAV  LPANAVNKSV  TWAVYEADGR  TPTDKAIIDV  NGLLVAAKDG1260
IVKVVATAND  GSQIFGNKII  TISGQNDNPG  VNPGSGSSSG  SGNPTTSPVK  EDPTKYVPKD1320
TELRVEPVQE  NQTGVTATID  RDRLVQKLAD  LKAASSSNLN  FELPGVYERN  AVQLPLDILY1380
NSLKESKGTV  LTLRNHLGSY  NLPLSILNRE  DVASAVDTEG  AVLIIRMDKA  KSQHELQFDQ1440
SITENGMKRV  SDMIDYKVIL  KSKDKEVEIT  NFGNSFITRM  MNVDGVIQDS  SIATAVVYDQ1500
ATGEMKFVPS  VFTVKDGKTE  ATITRNTNSL  YAIVQHKKTF  DDMNGHWAQK  DVESLASKMV1560
IDGTTDHTYT  PEMQVTRTQF  AALLVRGLGL  RAETTPSVFT  DVSDNQWYAS  EVGTAAKYGL1620
VQGVGEGRFN  PDQLITREQM  VVMMMKAAHL  VQGELKPEAG  TNIQFSDQDQ  LSDYARSAVA1680
EAASKGLVHG  KTETTFAPQE  AATRAEAAVL  IKQAMQYLKL  IN1722

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH29(26-326)+CBM32(346-463)+CBM13(491-671)+CBM51(723-863)+CBM51(881-1028)+SLH(1540-1578)+SLH(1599-1638)+SLH(1665-1707)

MCKKISTCVG  LIFMLLFVTV  APVFASTNIQ  STASPVVNDS  YTNQKNYVDL  RFGMFIHYNM60
GTYHDQEWVT  PGQDPLSFNP  EHVNTDQWAQ  AAESAGIKYT  VLTTKHHDGF  ALWPTKYGNY120
NVMNSSYKKD  IVRQYVDSMR  AKGILPGLYF  SIWDRQQGIQ  KGSVSRADIE  FIKGQLTELL180
TNYGEIPVLI  IDGWAWEMGH  NEVPYQEIRE  LIKRLQPNIL  IVDHNGQTQP  WDEDIIYFEE240
PKGVWAPSNN  AYAANQGMPL  VSSQWFWHNW  MTNTEPASVQ  NIVQDHLGFL  EPRYTNFLLN300
VSPNPDGELD  NNVVNRLGEI  GQAWSPNASR  PPLPGQPIVM  EHPITANSAT  ATSGNASNAI360
DGLMDYVNDT  YSETVWQTNT  SLPQSITFDL  GYTYNNINML  NYLPSQNLSE  GMITSYTLYV420
SEDGTNFTSV  TSGTWDGDKT  MKRVTFPSQT  ARYVKMEVNS  AVGGFAAAGE  LAVGSYTNEV480
PTRTGIDSFD  VNTLYRIVNK  ATGKVLGVGN  SPANGAAVAE  RTQSGALDQQ  WVIDDVGLGK540
YKIANKQSGQ  VMDVPGASKT  PEVPVIQWTD  SETAADPTAI  NQQWTISNVG  NGYFKITNVN600
SRLALEISNG  SAADGNPVVQ  NTYTGSDSQL  WKVEKLPSLI  KNVKVNGVSV  KGLNSENRTA660
TLTVLREKNL  EVPTVTADKA  SEDVQLVIHP  ADSLPGATTI  TATADGGATQ  EVYTLNFELV720
DRYASDLEWL  SASSGWLTVK  KDKSLDGNTI  RLMGNSGAAT  YEKGFGVHAE  SRIIFDISDK780
NYESFTALAG  VDQEMAKSPS  YADVEFKVLV  DGVEKFASGV  MKVTDLAKAV  DVNVVGASVV840
ELVVTKSDND  NSEDHASWAN  ATFRIAEGKS  EQKEELPEVD  YLSDLNWISA  SSGWLDVKKD900
KSIAGNAIVL  KNGAEDLSFA  KGLGTHANST  IKYDLTGANY  ETFSAFIGVD  KEVNGGSYKG960
NGSIQFKVSG  VKNDDTIESL  YSGSLLRVSD  DAKFVKVNVK  GYKELILEVT  DSGNGNSEDH1020
GDWANAKLTK  LNVEATPVIS  GVMPVNVVTA  TYVPPVLPAS  VTVVYNNATT  ADKSVQWDLV1080
DSSKYKSAGS  FIVNGAVDGT  VIPAVANVTV  TENTYRADLV  ALIANAQVQY  DFAVVGTAVG1140
NYPASSKSTL  QAAIAHAQQL  VDLNAATKQE  FEAETAALNT  ALQTFVLTKI  GQVNVQSITV1200
TNSTTTISVK  GGSLQLQAAV  LPANAVNKSV  TWAVYEADGR  TPTDKAIIDV  NGLLVAAKDG1260
IVKVVATAND  GSQIFGNKII  TISGQNDNPG  VNPGSGSSSG  SGNPTTSPVK  EDPTKYVPKD1320
TELRVEPVQE  NQTGVTATID  RDRLVQKLAD  LKAASSSNLN  FELPGVYERN  AVQLPLDILY1380
NSLKESKGTV  LTLRNHLGSY  NLPLSILNRE  DVASAVDTEG  AVLIIRMDKA  KSQHELQFDQ1440
SITENGMKRV  SDMIDYKVIL  KSKDKEVEIT  NFGNSFITRM  MNVDGVIQDS  SIATAVVYDQ1500
ATGEMKFVPS  VFTVKDGKTE  ATITRNTNSL  YAIVQHKKTF  DDMNGHWAQK  DVESLASKMV1560
IDGTTDHTYT  PEMQVTRTQF  AALLVRGLGL  RAETTPSVFT  DVSDNQWYAS  EVGTAAKYGL1620
VQGVGEGRFN  PDQLITREQM  VVMMMKAAHL  VQGELKPEAG  TNIQFSDQDQ  LSDYARSAVA1680
EAASKGLVHG  KTETTFAPQE  AATRAEAAVL  IKQAMQYLKL  IN1722

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help