CAZyme3D

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Entry ID

Information for CAZyme ID: UKJ62872.1

Basic Information

GenBank IDUKJ62872.1
FamilyGH114
Sequence Length349
UniProt IDA0A0H2KTV1(93.5,84.0)Download
Average pLDDT?90.21
CAZy50 ID132780
CAZy50 RepYes, UKJ62872.1
Structure ClusterSC_GH114_clus11
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1710
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyPromicromonosporaceae
GenusCellulosimicrobium
SpeciesCellulosimicrobium cellulans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRAWSRGTT  AVVVVGVLLA  VSGGCAVERP  DTATASPLDV  PAPEPPPTEG  VLDYQLGGAY60
DEVDAGSGPV  APDVVVRDAT  AEPLPGAYSV  CYVNGFQTQP  GEADRWLDDH  EDLLLHDAAG120
GLVVDPDWPD  EHVLDPSTAE  QRDGILAVLG  PVVTGCADDG  FDAVEIDNLD  TWTRFDAIDE180
DGAHALARAY  VDLAHDAGLA  IAQKNAAEVA  GVARDDLGFD  FAVTEECAVF  DECAAYTDVY240
GDHVLQVEYP  DALDDAGLTF  DDVCARDDRA  PLTVLRDRDL  VAPDDPGYVY  ANCWGSADIT300
TRTEVTVHES  SNAAHEASHP  GVVAAPGSDA  LWISTAFRQV  GVARATITE349

Predicted 3D structure by AlphaFold2 with pLDDT = 90.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSRAWSRGTT  AVVVVGVLLA  VSGGCAVERP  DTATASPLDV  PAPEPPPTEG  VLDYQLGGAY60
DEVDAGSGPV  APDVVVRDAT  AEPLPGAYSV  CYVNGFQTQP  GEADRWLDDH  EDLLLHDAAG120
GLVVDPDWPD  EHVLDPSTAE  QRDGILAVLG  PVVTGCADDG  FDAVEIDNLD  TWTRFDAIDE180
DGAHALARAY  VDLAHDAGLA  IAQKNAAEVA  GVARDDLGFD  FAVTEECAVF  DECAAYTDVY240
GDHVLQVEYP  DALDDAGLTF  DDVCARDDRA  PLTVLRDRDL  VAPDDPGYVY  ANCWGSADIT300
TRTEVTVHES  SNAAHEASHP  GVVAAPGSDA  LWISTAFRQV  GVARATITE349

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH114(78-249)

MSGAWSRGTT  AVAVVSVVLA  VSGGCAVERT  FTDTASPLEV  PAPEPPPTAG  VLDYQLGGAY60
DEVDAGSGPV  APDVVVRDAT  AEPLPGAYSV  CYVNGFQTQP  GEADRWLDDH  EDLLLHDASG120
GLVVDPDWPD  EHVLDPSTPE  QREGILAILG  PVVTGCADDG  FDAVEIDNLD  TWTRFDAIDE180
DGAHALARAY  VDLAHDAGLA  IAQKNAAEVA  GVARGVLGFD  FAVTEECAVF  DECAAYTDVY240
GDHVLQVEYP  DALDDAGLTF  DDVCARDDRA  PLTVLRDRDL  VTPDDPDYVY  MTC293

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help