Information for CAZyme ID: UKE70394.1
Basic Information
| GenBank ID | UKE70394.1 |
| Family | CBM13 |
| Sequence Length | 791 |
| UniProt ID | A0A514E9A8(95.8,93.0) |
| Average pLDDT? | 76.34 |
| CAZy50 ID | 28309 |
| CAZy50 Rep | Yes, UKE70394.1 |
| Structure Cluster | SC_CBM13_clus25, SC_CBM13_clus58 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 627605 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Xanthomonadales |
| Family | Xanthomonadaceae |
| Genus | Xanthomonas |
| Species | Xanthomonas translucens |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTEQAHGKFN PTHQLTRQAI LNPDAVQGQP AHRLAADHGN RIETQVCAVI KEKRCMYNRG | 60 |
| IILASCVAVA AGVWFGGCVS KSGASHAASN AGQAAAQGQA PVKTALARSA ANGASPQLAP | 120 |
| GTSPYFDAPD NGTLVTYVGH ATPAKEGPFE LFPARISERY ALRATMEGKM TIVAPDGTRL | 180 |
| QMDYVRHTEG KNGNWTWVGR LPGALVGEES VITFGKNAVF GSLGASGGKV YRISTVEGQP | 240 |
| YVMAASEVEV RSAAPSRRGD AREMLPSANA APLAAATGTI PNYSNLGKVN AAAGTTSTNT | 300 |
| IDVVLGYTPD YKAYRGGESA TETVLTNLVE VANQAFANAN VQARYRLVGI IEVGYTNNND | 360 |
| NSQALDELTW IQAYNDAFRP IRQVRENDGA DLVALVRRFN SASQNSCGVA WVNGSTDSRY | 420 |
| AYAIVSDGVD GNYSCYSTTL GHELGHLLGS HHQRETGQET GYNYGHRSDV GSFHTVMAYA | 480 |
| VNGQREVNIY STPSIQGCYG QACGVIAEAD NASAFMLTVP RVVQYRATVV PFDDSSSPGQ | 540 |
| IVGPSGKCLD VVDGSTENTA RTQVWGCNGL RQQKWQWQSK TRTLRNNGTD KVLDIAGSNS | 600 |
| SNGAGVQLYQ GLNASNQRWS FRSSAIIATG GKVLDVVNGG SGNGARLQTW DNLGGSNQTW | 660 |
| QFDSATGAIQ VSSGRCLDVM GGGVTNGTAV QLWDCSGNKY QKWSLGTNGS IVGYGGNCLE | 720 |
| ARGSSGANGN TILMATCNGS AAQAWRIRGQ IRSDFNNKCL DDSEGGRSNG ARVQMWECLG | 780 |
| NPNQTWELQP N | 791 |
Predicted 3D structure by AlphaFold2 with pLDDT = 76.34 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MTEQAHGKFN PTHQLTRQAI LNPDAVQGQP AHRLAADHGN RIETQVCAVI KEKRCMYNRG | 60 |
| IILASCVAVA AGVWFGGCVS KSGASHAASN AGQAAAQGQA PVKTALARSA ANGASPQLAP | 120 |
| GTSPYFDAPD NGTLVTYVGH ATPAKEGPFE LFPARISERY ALRATMEGKM TIVAPDGTRL | 180 |
| QMDYVRHTEG KNGNWTWVGR LPGALVGEES VITFGKNAVF GSLGASGGKV YRISTVEGQP | 240 |
| YVMAASEVEV RSAAPSRRGD AREMLPSANA APLAAATGTI PNYSNLGKVN AAAGTTSTNT | 300 |
| IDVVLGYTPD YKAYRGGESA TETVLTNLVE VANQAFANAN VQARYRLVGI IEVGYTNNND | 360 |
| NSQALDELTW IQAYNDAFRP IRQVRENDGA DLVALVRRFN SASQNSCGVA WVNGSTDSRY | 420 |
| AYAIVSDGVD GNYSCYSTTL GHELGHLLGS HHQRETGQET GYNYGHRSDV GSFHTVMAYA | 480 |
| VNGQREVNIY STPSIQGCYG QACGVIAEAD NASAFMLTVP RVVQYRATVV PFDDSSSPGQ | 540 |
| IVGPSGKCLD VVDGSTENTA RTQVWGCNGL RQQKWQWQSK TRTLRNNGTD KVLDIAGSNS | 600 |
| SNGAGVQLYQ GLNASNQRWS FRSSAIIATG GKVLDVVNGG SGNGARLQTW DNLGGSNQTW | 660 |
| QFDSATGAIQ VSSGRCLDVM GGGVTNGTAV QLWDCSGNKY QKWSLGTNGS IVGYGGNCLE | 720 |
| ARGSSGANGN TILMATCNGS AAQAWRIRGQ IRSDFNNKCL DDSEGGRSNG ARVQMWECLG | 780 |
| NPNQTWELQP N | 791 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.