Information for CAZyme ID: UJX45054.1
Basic Information
| GenBank ID | UJX45054.1 |
| Family | GT4 |
| Sequence Length | 645 |
| UniProt ID | UJX45054.1(MOD) |
| Average pLDDT? | 73.40 |
| CAZy50 ID | 46012 |
| CAZy50 Rep | Yes, UJX45054.1 |
| Structure Cluster | SC_GT4_clus614 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2419844 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Xanthobacteraceae |
| Genus | Xanthobacter |
| Species | Xanthobacter sp. YC-JY1 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKLAISGRRN SAMARTSAPQ RAAAEGRTTE RCRRASRACR LSSSRSRELR RTSRSGDPPR | 60 |
| AGSRTRDATS WFTPRPSRSA PYCPSSPACA PPQPARVPGH AATSSRRACV SILAACRPDH | 120 |
| GLRLPNKRFA LQMPRPFVAG PPSADPVPDG DDALAARLDR MEETLARLAA GQEEIVRRLE | 180 |
| ALQDHANLVG YKVEQIAAGR PSRTFNLSLP LPLERLRDLI VAPGPSVGTL VEMWRAAGRT | 240 |
| TVVPERDSAG LLKARAQPAR RARTFGRDFT GLVFGRKGVV YRVRPHHPPV PARPRMLHII | 300 |
| PNVFVGGSTQ LVVDLMERLG HRYEMQVLTA ALPPQGRHEN MVIHHLPLGS PTSAFAHVLA | 360 |
| QVAPDIVHIH YWGDSDRPWY EAALEAARPT PAVLVENVNT PVEPLRDARI STYVFVSDYI | 420 |
| RAAFAPDIAN GRVVHPGIDL DAFTPGPWIG DAADSIGMVY RLHPDKLGEN SVDPLIAVAR | 480 |
| RRPQTRIIVV GDGELLPVFH AKAVAAGVIH NFEFAGTVPY ADLPTLYRRF RVFVAPVVRE | 540 |
| SFGQVTPFAM AMGQAVAGFK VGALPEILGT SETLAKDSEG LAGVICDLLD DPARLDAVGA | 600 |
| HNRERARMFG LDAMIAAYAE IYAQALGRPT DLMPGFPRAS LFAEV | 645 |
Predicted 3D structure by AlphaFold2 with pLDDT = 73.40 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKLAISGRRN SAMARTSAPQ RAAAEGRTTE RCRRASRACR LSSSRSRELR RTSRSGDPPR | 60 |
| AGSRTRDATS WFTPRPSRSA PYCPSSPACA PPQPARVPGH AATSSRRACV SILAACRPDH | 120 |
| GLRLPNKRFA LQMPRPFVAG PPSADPVPDG DDALAARLDR MEETLARLAA GQEEIVRRLE | 180 |
| ALQDHANLVG YKVEQIAAGR PSRTFNLSLP LPLERLRDLI VAPGPSVGTL VEMWRAAGRT | 240 |
| TVVPERDSAG LLKARAQPAR RARTFGRDFT GLVFGRKGVV YRVRPHHPPV PARPRMLHII | 300 |
| PNVFVGGSTQ LVVDLMERLG HRYEMQVLTA ALPPQGRHEN MVIHHLPLGS PTSAFAHVLA | 360 |
| QVAPDIVHIH YWGDSDRPWY EAALEAARPT PAVLVENVNT PVEPLRDARI STYVFVSDYI | 420 |
| RAAFAPDIAN GRVVHPGIDL DAFTPGPWIG DAADSIGMVY RLHPDKLGEN SVDPLIAVAR | 480 |
| RRPQTRIIVV GDGELLPVFH AKAVAAGVIH NFEFAGTVPY ADLPTLYRRF RVFVAPVVRE | 540 |
| SFGQVTPFAM AMGQAVAGFK VGALPEILGT SETLAKDSEG LAGVICDLLD DPARLDAVGA | 600 |
| HNRERARMFG LDAMIAAYAE IYAQALGRPT DLMPGFPRAS LFAEV | 645 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.