CAZyme3D

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Entry ID

Information for CAZyme ID: UJR16661.1

Basic Information

GenBank IDUJR16661.1
FamilyGT20
Sequence Length643
UniProt IDUJR16661.1(MOD)Download
Average pLDDT?70.94
CAZy50 ID46296
CAZy50 RepYes, UJR16661.1
Structure ClusterSC_GT20_clus73
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID104782
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderAdinetida
FamilyAdinetidae
GenusAdineta
SpeciesAdineta vaga

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLDTFLLPS  SADIGQQEYQ  LSMTSIPTHN  HLIKDQKNIS  ARMIIVANRL  PITMTIKSKR60
DGQSEVEFLS  SSGGVASALT  GISNLWIGWP  GGEVRNAEDR  KNVTEKLQAI  KSHDKRYLAY120
QDANAQFAKI  VLDNYDDGDI  VWIHDYHLML  VPSLLRRAKP  QMKIGFFFHT  PFPCGEVYCT180
LPSRSELLLG  VLNSNLIGFH  TDQYLRHFQS  AVSRLLNVEY  DNNQIRMQDI  MSRLGVYPIG240
IDARKFVDTV  ASDSCQEYVN  ELKLHFAGRK  VLLGIDRLDY  IKGILQKMLA  LELFFENHPE300
WIGKVILVQV  AVPSRTDVLE  YQMFKAETHK  LVGRINGRFG  SVANVPICYL  DQSMPFEKMC360
ALYHCADVMM  VTSIRDGMNL  VSYEYIACQK  DSTGVLILSE  FCGAAELLDG  GVLQINPWNI420
NDVANAIYKA  LTMTENERRK  LSDIACNYVM  GHTAKNWATK  FYEKLKHQEF  VSTNVSQPIH480
RNASRDINEK  ISKSLNMEMT  LSKFNSDQRE  LLITSLVDLI  HRVEALSPTT  IDDTNEKDTC540
ISRSQYQDVG  ELWGWRKSSA  TNSDTSNKVS  SVLDSCESIH  KNIATLEKTL  SDKNNNDECF600
TVDDNNNLSD  NNSSNSNDSV  RWFKVGSTIL  SVFKNLIKEI  NHD643

Predicted 3D structure by AlphaFold2 with pLDDT = 70.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPLDTFLLPS  SADIGQQEYQ  LSMTSIPTHN  HLIKDQKNIS  ARMIIVANRL  PITMTIKSKR60
DGQSEVEFLS  SSGGVASALT  GISNLWIGWP  GGEVRNAEDR  KNVTEKLQAI  KSHDKRYLAY120
QDANAQFAKI  VLDNYDDGDI  VWIHDYHLML  VPSLLRRAKP  QMKIGFFFHT  PFPCGEVYCT180
LPSRSELLLG  VLNSNLIGFH  TDQYLRHFQS  AVSRLLNVEY  DNNQIRMQDI  MSRLGVYPIG240
IDARKFVDTV  ASDSCQEYVN  ELKLHFAGRK  VLLGIDRLDY  IKGILQKMLA  LELFFENHPE300
WIGKVILVQV  AVPSRTDVLE  YQMFKAETHK  LVGRINGRFG  SVANVPICYL  DQSMPFEKMC360
ALYHCADVMM  VTSIRDGMNL  VSYEYIACQK  DSTGVLILSE  FCGAAELLDG  GVLQINPWNI420
NDVANAIYKA  LTMTENERRK  LSDIACNYVM  GHTAKNWATK  FYEKLKHQEF  VSTNVSQPIH480
RNASRDINEK  ISKSLNMEMT  LSKFNSDQRE  LLITSLVDLI  HRVEALSPTT  IDDTNEKDTC540
ISRSQYQDVG  ELWGWRKSSA  TNSDTSNKVS  SVLDSCESIH  KNIATLEKTL  SDKNNNDECF600
TVDDNNNLSD  NNSSNSNDSV  RWFKVGSTIL  SVFKNLIKEI  NHD643

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT20(109-466)

MPLDTFLLPS  SADIGQQEYQ  LSMTSIPTHN  HLIKDQKNIS  ARMIIVANRL  PITMTIKSKR60
DGQSEVEFLS  SSGGVASALT  GISNLWIGWP  GGEVRNAEDR  KNVTEKLQAI  KSHDKRYLAY120
QDANAQFAKI  VLDNYDDGDI  VWIHDYHLML  VPSLLRRAKP  QMKIGFFFHT  PFPCGEVYCT180
LPSRSELLLG  VLNSNLIGFH  TDQYLRHFQS  AVSRLLNVEY  DNNQIRMQDI  MSRLGVYPIG240
IDARKFVDTV  ASDSCQEYVN  ELKLHFAGRK  VLLGIDRLDY  IKGILQKMLA  LELFFENHPE300
WIGKVILVQV  AVPSRTDVLE  YQMFKAETHK  LVGRINGRFG  SVANVPICYL  DQSMPFEKMC360
ALYHCADVMM  VTSIRDGMNL  VSYEYIACQK  DSTGVLILSE  FCGAAELLDG  GVLQINPWNI420
NDVANAIYKA  LTMTENERRK  LSDIACNYVM  GHTAKNWATK  FYEKLKHQEF  VSTNVSQPIH480
RNASRDINEK  ISKSLNMEMT  LSKFNSDQRE  LLITSLVDLI  HRVEALSPTT  IDDTNEKDTC540
ISRSQYQDVG  ELWGWRKSSA  TNSDTSNKVS  SVLDSCESIH  KNIATLEKTL  SDKNNNDECF600
TVDDNNNLSD  NNSSNSNDSV  RWFKVGSTIL  SVFKNLIKEI  NHD643

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help