CAZyme3D

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Entry ID

Information for CAZyme ID: UJR11893.1

Basic Information

GenBank IDUJR11893.1
FamilyGT7
Sequence Length842
UniProt IDUJR11893.1(MOD)Download
Average pLDDT?53.62
CAZy50 ID23601
CAZy50 RepYes, UJR11893.1
Structure ClusterSC_GT7_clus75
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID104782
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderAdinetida
FamilyAdinetidae
GenusAdineta
SpeciesAdineta vaga

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MATGKENNID  MDADDYEHFL  PYYLYVGNHL  EQYYQEYVKN  HGDPQTAVSL  QETEPQDELS60
QPSSETSEGH  PTPRQFEKMC  YATAGPACER  LAAETRQNVK  LIEPRTIHTY  RYKDAKTGEM120
VEKGIKPDMI  IAFSHDGVRG  KNVVVDAKSH  KGAIQMSDYR  KLDRDRKVTK  SSHAILFINT180
NSKLPKSVEE  AVEADPHMNI  IRYNGEQPNA  TSREFVDKVG  PHVSGSEFRA  DDQRYENNKQ240
YVDQSDLKKQ  KYPNPLGKQN  SELTKNTHRH  FTGYDFRHPR  KPDGSLDRDQ  AVNEGLKEDG300
TLDMRLNENK  NVEQVEQHLT  QAGEPDMRFA  ENKNVEQVEQ  HLTQAGEPDM  RFAENKNVEE360
VEQHLTQAGE  PDMRFAENKN  VEQVEQHLTQ  AGEPDMRFAE  NKNVEEVEQH  LTQAGEPDMR420
FAENKNVEQV  EQHLTQAGEP  DMRFAENKNV  EEVEQHLTQA  GEPDMRFKEN  QEAVASAEAQ480
TIDSGEETVA  EVGISSGSGE  GDEHLKADGT  PDMRYSSNRE  DIAEMEETED  IPEMNEGMST540
MSLDDGGADS  AGDGPLKADG  TPDMRFSANQ  KKAQLTILRV  ESQHGSDIHI  GGHWYPLNCL600
ANQRLALIIC  YRQRDQHLRI  FLNHIHPFLK  EQQLDYTIIV  VNQNGKEKFN  RGALFNVGYI660
EAIKLYSFNC  FIFHDVDLLP  EDSRNIYQCH  SLPRHMSVAV  DKFNYRLLYP  TLFGGVTSFH720
IDDFVHANGF  PNVYWGWGNE  DDDMYLRVTK  RLKKNITRYP  IEIARYQMIR  THGHKSGMVN780
PYRDKLLRSN  YDFDLDGLNT  IRYNLHQVTL  HRLFTLINVT  LFEETYEQIL  IRLNITRKEK840
RT842

Predicted 3D structure by AlphaFold2 with pLDDT = 53.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MATGKENNID  MDADDYEHFL  PYYLYVGNHL  EQYYQEYVKN  HGDPQTAVSL  QETEPQDELS60
QPSSETSEGH  PTPRQFEKMC  YATAGPACER  LAAETRQNVK  LIEPRTIHTY  RYKDAKTGEM120
VEKGIKPDMI  IAFSHDGVRG  KNVVVDAKSH  KGAIQMSDYR  KLDRDRKVTK  SSHAILFINT180
NSKLPKSVEE  AVEADPHMNI  IRYNGEQPNA  TSREFVDKVG  PHVSGSEFRA  DDQRYENNKQ240
YVDQSDLKKQ  KYPNPLGKQN  SELTKNTHRH  FTGYDFRHPR  KPDGSLDRDQ  AVNEGLKEDG300
TLDMRLNENK  NVEQVEQHLT  QAGEPDMRFA  ENKNVEQVEQ  HLTQAGEPDM  RFAENKNVEE360
VEQHLTQAGE  PDMRFAENKN  VEQVEQHLTQ  AGEPDMRFAE  NKNVEEVEQH  LTQAGEPDMR420
FAENKNVEQV  EQHLTQAGEP  DMRFAENKNV  EEVEQHLTQA  GEPDMRFKEN  QEAVASAEAQ480
TIDSGEETVA  EVGISSGSGE  GDEHLKADGT  PDMRYSSNRE  DIAEMEETED  IPEMNEGMST540
MSLDDGGADS  AGDGPLKADG  TPDMRFSANQ  KKAQLTILRV  ESQHGSDIHI  GGHWYPLNCL600
ANQRLALIIC  YRQRDQHLRI  FLNHIHPFLK  EQQLDYTIIV  VNQNGKEKFN  RGALFNVGYI660
EAIKLYSFNC  FIFHDVDLLP  EDSRNIYQCH  SLPRHMSVAV  DKFNYRLLYP  TLFGGVTSFH720
IDDFVHANGF  PNVYWGWGNE  DDDMYLRVTK  RLKKNITRYP  IEIARYQMIR  THGHKSGMVN780
PYRDKLLRSN  YDFDLDGLNT  IRYNLHQVTL  HRLFTLINVT  LFEETYEQIL  IRLNITRKEK840
RT842

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT7(575-820)

MATGKENNID  MDADDYEHFL  PYYLYVGNHL  EQYYQEYVKN  HGDPQTAVSL  QETEPQDELS60
QPSSETSEGH  PTPRQFEKMC  YATAGPACER  LAAETRQNVK  LIEPRTIHTY  RYKDAKTGEM120
VEKGIKPDMI  IAFSHDGVRG  KNVVVDAKSH  KGAIQMSDYR  KLDRDRKVTK  SSHAILFINT180
NSKLPKSVEE  AVEADPHMNI  IRYNGEQPNA  TSREFVDKVG  PHVSGSEFRA  DDQRYENNKQ240
YVDQSDLKKQ  KYPNPLGKQN  SELTKNTHRH  FTGYDFRHPR  KPDGSLDRDQ  AVNEGLKEDG300
TLDMRLNENK  NVEQVEQHLT  QAGEPDMRFA  ENKNVEQVEQ  HLTQAGEPDM  RFAENKNVEE360
VEQHLTQAGE  PDMRFAENKN  VEQVEQHLTQ  AGEPDMRFAE  NKNVEEVEQH  LTQAGEPDMR420
FAENKNVEQV  EQHLTQAGEP  DMRFAENKNV  EEVEQHLTQA  GEPDMRFKEN  QEAVASAEAQ480
TIDSGEETVA  EVGISSGSGE  GDEHLKADGT  PDMRYSSNRE  DIAEMEETED  IPEMNEGMST540
MSLDDGGADS  AGDGPLKADG  TPDMRFSANQ  KKAQLTILRV  ESQHGSDIHI  GGHWYPLNCL600
ANQRLALIIC  YRQRDQHLRI  FLNHIHPFLK  EQQLDYTIIV  VNQNGKEKFN  RGALFNVGYI660
EAIKLYSFNC  FIFHDVDLLP  EDSRNIYQCH  SLPRHMSVAV  DKFNYRLLYP  TLFGGVTSFH720
IDDFVHANGF  PNVYWGWGNE  DDDMYLRVTK  RLKKNITRYP  IEIARYQMIR  THGHKSGMVN780
PYRDKLLRSN  YDFDLDGLNT  IRYNLHQVTL  HRLFTLINVT  LFEETYEQIL  IRLNITRKEK840
RT842

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help