CAZyme3D

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Entry ID

Information for CAZyme ID: UJR09194.1

Basic Information

GenBank IDUJR09194.1
FamilyGH32
Sequence Length578
UniProt IDUJR09194.1(MOD)Download
Average pLDDT?93.92
CAZy50 ID55460
CAZy50 RepYes, UJR09194.1
Structure ClusterSC_GH32_clus114
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID104782
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderAdinetida
FamilyAdinetidae
GenusAdineta
SpeciesAdineta vaga

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQTILFFVSL  ITIFEVVQAD  DPLRPQYHMM  PAKNWLNDPN  GPVYFNGYYH  MFFQYNPNAA60
VWGDMHWGHC  YSKDMVHWIH  LPVALAPDQP  YDINGIFSGS  TTIVNGIPTI  IYTGITNTSA120
QVQCQAQPVD  MSDPTLTNWK  KSLLNPLITT  PNGRDPSTAF  QDDEQNYYLI  YGYGTEDLGG180
QAVLFTSKDF  LKWTYLHPFH  SNHYDSFWEC  PDIFAVTNRI  VLKASLLGRD  FWTLGDIDPI240
KLIFIPDNHD  LGEFIQLIDH  GRFYASKTFY  DPVNDQQIIM  GWTSEEDNLG  PKRGWQGCHT300
LPRTIFLSDD  GSELRSRPID  ALKTLRDEQS  HESFHSVVLP  SYIPFELIPN  THGNQIEILI360
NWQFPMHQNL  DFGLIVLSTS  NGSQQTSIGI  TSRDNTSVMF  NWDLSGWDYF  SVPSIIDWSS420
CQIACNKDPK  CQAWTFVKDR  QINNNCFLKS  GIPFLTSNSV  CISGVKQRHD  DKQIIWIYMN480
RILSQKNPDA  AHNILHAPIW  MESTNANTHW  FLQLDIFIDH  SVIEIFEPQG  GRFALTGHVY540
PEEENADNLA  VYVNEAPNDD  DSIVIDTIDV  WKLYTIWT578

Predicted 3D structure by AlphaFold2 with pLDDT = 93.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQTILFFVSL  ITIFEVVQAD  DPLRPQYHMM  PAKNWLNDPN  GPVYFNGYYH  MFFQYNPNAA60
VWGDMHWGHC  YSKDMVHWIH  LPVALAPDQP  YDINGIFSGS  TTIVNGIPTI  IYTGITNTSA120
QVQCQAQPVD  MSDPTLTNWK  KSLLNPLITT  PNGRDPSTAF  QDDEQNYYLI  YGYGTEDLGG180
QAVLFTSKDF  LKWTYLHPFH  SNHYDSFWEC  PDIFAVTNRI  VLKASLLGRD  FWTLGDIDPI240
KLIFIPDNHD  LGEFIQLIDH  GRFYASKTFY  DPVNDQQIIM  GWTSEEDNLG  PKRGWQGCHT300
LPRTIFLSDD  GSELRSRPID  ALKTLRDEQS  HESFHSVVLP  SYIPFELIPN  THGNQIEILI360
NWQFPMHQNL  DFGLIVLSTS  NGSQQTSIGI  TSRDNTSVMF  NWDLSGWDYF  SVPSIIDWSS420
CQIACNKDPK  CQAWTFVKDR  QINNNCFLKS  GIPFLTSNSV  CISGVKQRHD  DKQIIWIYMN480
RILSQKNPDA  AHNILHAPIW  MESTNANTHW  FLQLDIFIDH  SVIEIFEPQG  GRFALTGHVY540
PEEENADNLA  VYVNEAPNDD  DSIVIDTIDV  WKLYTIWT578

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(28-318)

MQTILFFVSL  ITIFEVVQAD  DPLRPQYHMM  PAKNWLNDPN  GPVYFNGYYH  MFFQYNPNAA60
VWGDMHWGHC  YSKDMVHWIH  LPVALAPDQP  YDINGIFSGS  TTIVNGIPTI  IYTGITNTSA120
QVQCQAQPVD  MSDPTLTNWK  KSLLNPLITT  PNGRDPSTAF  QDDEQNYYLI  YGYGTEDLGG180
QAVLFTSKDF  LKWTYLHPFH  SNHYDSFWEC  PDIFAVTNRI  VLKASLLGRD  FWTLGDIDPI240
KLIFIPDNHD  LGEFIQLIDH  GRFYASKTFY  DPVNDQQIIM  GWTSEEDNLG  PKRGWQGCHT300
LPRTIFLSDD  GSELRSRPID  ALKTLRDEQS  HESFHSVVLP  SYIPFELIPN  THGNQIEILI360
NWQFPMHQNL  DFGLIVLSTS  NGSQQTSIGI  TSRDNTSVMF  NWDLSGWDYF  SVPSIIDWSS420
CQIACNKDPK  CQAWTFVKDR  QINNNCFLKS  GIPFLTSNSV  CISGVKQRHD  DKQIIWIYMN480
RILSQKNPDA  AHNILHAPIW  MESTNANTHW  FLQLDIFIDH  SVIEIFEPQG  GRFALTGHVY540
PEEENADNLA  VYVNEAPNDD  DSIVIDTIDV  WKLYTIWT578

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help