CAZyme3D

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Entry ID

Information for CAZyme ID: UJR08022.1

Basic Information

GenBank IDUJR08022.1
FamilyGH110
Sequence Length675
UniProt IDUJR08022.1(MOD)Download
Average pLDDT?85.48
CAZy50 ID41766
CAZy50 RepYes, UJR08022.1
Structure ClusterSC_GH110_clus27
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID104782
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderAdinetida
FamilyAdinetidae
GenusAdineta
SpeciesAdineta vaga

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVFVHEYFIL  FIISIQCFYS  QGLIFPVASF  GAYPNDNIDD  TSATQNAIAA  AVSNGTNNVV60
LFQSGTYDFS  GTIYIYGAIG  FTLTGQGMDQ  TLLLVHSPIP  LFYTINSQQV  TIKAFAIDFN120
PLPFTAGYVV  SVTSSYLDLQ  VVAPHQTDVG  QKVGAIFRYD  PVLKKPAIGN  KTYEIYQTPP180
ANKNTTLISN  GTLRIYLQFP  TQFVVGDAIV  ARYSFTIHAL  YGQDVTDLTI  QSLTIYTAWY240
FGIYTSRTRR  LHMIDYHVKP  RDGRWLSTSG  DCMHFGDSRE  FINIEDCSCE  GQGDDGLNVQ300
AFVFEVVQKL  NSTALIIKTN  NWEDTLNIGI  GTNVEFSTSS  QPFTPYTSAI  VASSTSINST360
SRLFTFTSSI  SVNVGDRVCV  VDNLTLTIRN  LTVTNNRARG  ILLSTQNVHI  TKSLFNGTSA420
PAILFQPSLY  WNEGPAPRNM  ILSENVFINC  NQGLYRQSGV  ITMAPDPTQL  VPVMYNIKIT480
SSTFYNGPYS  GGMIQCTNVD  GVVLSGNYLA  TNNSIAPVIF  CNSRNITAYD  NTVVNTQSVI540
NQYYLYDTTS  PCLANLSSII  NISASAFNSS  FPPPVIPTAS  GVQVNTYQST  TTSSTSTTSS600
TSSTNIVITT  TTSTIGNSST  SSTINSNSTV  STSTSNIHRT  SVASQKDFSR  WYIVTLLTWK660
LLHYSIFSFD  NTLYN675

Predicted 3D structure by AlphaFold2 with pLDDT = 85.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVFVHEYFIL  FIISIQCFYS  QGLIFPVASF  GAYPNDNIDD  TSATQNAIAA  AVSNGTNNVV60
LFQSGTYDFS  GTIYIYGAIG  FTLTGQGMDQ  TLLLVHSPIP  LFYTINSQQV  TIKAFAIDFN120
PLPFTAGYVV  SVTSSYLDLQ  VVAPHQTDVG  QKVGAIFRYD  PVLKKPAIGN  KTYEIYQTPP180
ANKNTTLISN  GTLRIYLQFP  TQFVVGDAIV  ARYSFTIHAL  YGQDVTDLTI  QSLTIYTAWY240
FGIYTSRTRR  LHMIDYHVKP  RDGRWLSTSG  DCMHFGDSRE  FINIEDCSCE  GQGDDGLNVQ300
AFVFEVVQKL  NSTALIIKTN  NWEDTLNIGI  GTNVEFSTSS  QPFTPYTSAI  VASSTSINST360
SRLFTFTSSI  SVNVGDRVCV  VDNLTLTIRN  LTVTNNRARG  ILLSTQNVHI  TKSLFNGTSA420
PAILFQPSLY  WNEGPAPRNM  ILSENVFINC  NQGLYRQSGV  ITMAPDPTQL  VPVMYNIKIT480
SSTFYNGPYS  GGMIQCTNVD  GVVLSGNYLA  TNNSIAPVIF  CNSRNITAYD  NTVVNTQSVI540
NQYYLYDTTS  PCLANLSSII  NISASAFNSS  FPPPVIPTAS  GVQVNTYQST  TTSSTSTTSS600
TSSTNIVITT  TTSTIGNSST  SSTINSNSTV  STSTSNIHRT  SVASQKDFSR  WYIVTLLTWK660
LLHYSIFSFD  NTLYN675

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH110(27-517)

MVFVHEYFIL  FIISIQCFYS  QGLIFPVASF  GAYPNDNIDD  TSATQNAIAA  AVSNGTNNVV60
LFQSGTYDFS  GTIYIYGAIG  FTLTGQGMDQ  TLLLVHSPIP  LFYTINSQQV  TIKAFAIDFN120
PLPFTAGYVV  SVTSSYLDLQ  VVAPHQTDVG  QKVGAIFRYD  PVLKKPAIGN  KTYEIYQTPP180
ANKNTTLISN  GTLRIYLQFP  TQFVVGDAIV  ARYSFTIHAL  YGQDVTDLTI  QSLTIYTAWY240
FGIYTSRTRR  LHMIDYHVKP  RDGRWLSTSG  DCMHFGDSRE  FINIEDCSCE  GQGDDGLNVQ300
AFVFEVVQKL  NSTALIIKTN  NWEDTLNIGI  GTNVEFSTSS  QPFTPYTSAI  VASSTSINST360
SRLFTFTSSI  SVNVGDRVCV  VDNLTLTIRN  LTVTNNRARG  ILLSTQNVHI  TKSLFNGTSA420
PAILFQPSLY  WNEGPAPRNM  ILSENVFINC  NQGLYRQSGV  ITMAPDPTQL  VPVMYNIKIT480
SSTFYNGPYS  GGMIQCTNVD  GVVLSGNYLA  TNNSIAPVIF  CNSRNITAYD  NTVVNTQSVI540
NQYYLYDTTS  PCLANLSSII  NISASAFNSS  FPPPVIPTAS  GVQVNTYQST  TTSSTSTTSS600
TSSTNIVITT  TTSTIGNSST  SSTINSNSTV  STSTSNIHRT  SVASQKDFSR  WYIVTLLTWK660
LLHYSIFSFD  NTLYN675

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help