Information for CAZyme ID: UJP41319.1
Basic Information
| GenBank ID | UJP41319.1 |
| Family | GH42 |
| Sequence Length | 698 |
| UniProt ID | UJP41319.1(MOD) |
| Average pLDDT? | 93.60 |
| CAZy50 ID | 38964 |
| CAZy50 Rep | Yes, UJP41319.1 |
| Structure Cluster | SC_GH42_clus31 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2608402 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Cellulomonadaceae |
| Genus | Cellulomonas |
| Species | Cellulomonas palmilytica |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTAPARRGLA SLTHRPACRP GGHPGGHPGG HPGGRRVLYG ADYNPEQWPR ATWREDVALM | 60 |
| REAHVNLVTV GVFSWSVLEP APGEYAFGWL DEVLDLLHEN GVSVDLATPS ASPPPWLAAL | 120 |
| HPRTSSVDAR GVRMSVGSRN HFCPSAPEYR EAALRAATAL VERYAGHPAL ALWHVGNEFG | 180 |
| QECFCDLCAA ALRRWLVARY GDVDALNDAW GTAFWSQRYR SFDEVVPPRA VPYLHNPAQH | 240 |
| VDWRRFSSDQ LRSLYREQAA VLRAGSDAPV TTNFMGFFGG VDQHSWAADL DVVSDDHYGD | 300 |
| PQDPASPARS ALTHDLTRGV GGGEPWLLME QAAGAVNWRP HNVPKTTAQM LQDSLRAVAH | 360 |
| GADGVCYFQW RQSTAGSESF HSALLPHAGP DTHLHRAVRE QGRLLAGLGD VVGTRVPARA | 420 |
| ALVVDWPAMW AGELPARPSD RLRVVEQLEA YHRPLWRAGI ATDVVASDAE LDAYDLVVVP | 480 |
| SLPLVSDAAA ASIASVPQRG GVLLVGPFSG VQDPTTRVRT GLFPGPWTDV LGVAGEEWRP | 540 |
| LPDAGVTVRS ATYGDHVARV WSERLTARGA EVLATYDDGD LAGSPALTRR VLPGGGQAWY | 600 |
| VSTVPDPGVL ERVLLDCAAA AGVHGPLPLV PDGVEVAQRG DLVFLLNHAS DERAVELAAH | 660 |
| ARDLLGARVT DGVLRLPPGG AAVVAGARAG DPVATPPG | 698 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.60 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MTAPARRGLA SLTHRPACRP GGHPGGHPGG HPGGRRVLYG ADYNPEQWPR ATWREDVALM | 60 |
| REAHVNLVTV GVFSWSVLEP APGEYAFGWL DEVLDLLHEN GVSVDLATPS ASPPPWLAAL | 120 |
| HPRTSSVDAR GVRMSVGSRN HFCPSAPEYR EAALRAATAL VERYAGHPAL ALWHVGNEFG | 180 |
| QECFCDLCAA ALRRWLVARY GDVDALNDAW GTAFWSQRYR SFDEVVPPRA VPYLHNPAQH | 240 |
| VDWRRFSSDQ LRSLYREQAA VLRAGSDAPV TTNFMGFFGG VDQHSWAADL DVVSDDHYGD | 300 |
| PQDPASPARS ALTHDLTRGV GGGEPWLLME QAAGAVNWRP HNVPKTTAQM LQDSLRAVAH | 360 |
| GADGVCYFQW RQSTAGSESF HSALLPHAGP DTHLHRAVRE QGRLLAGLGD VVGTRVPARA | 420 |
| ALVVDWPAMW AGELPARPSD RLRVVEQLEA YHRPLWRAGI ATDVVASDAE LDAYDLVVVP | 480 |
| SLPLVSDAAA ASIASVPQRG GVLLVGPFSG VQDPTTRVRT GLFPGPWTDV LGVAGEEWRP | 540 |
| LPDAGVTVRS ATYGDHVARV WSERLTARGA EVLATYDDGD LAGSPALTRR VLPGGGQAWY | 600 |
| VSTVPDPGVL ERVLLDCAAA AGVHGPLPLV PDGVEVAQRG DLVFLLNHAS DERAVELAAH | 660 |
| ARDLLGARVT DGVLRLPPGG AAVVAGARAG DPVATPPG | 698 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.