CAZyme3D

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Entry ID

Information for CAZyme ID: UJO22018.1

Basic Information

GenBank IDUJO22018.1
FamilyCE16
Sequence Length313
UniProt IDA0A9Q8PGF7(100,100)Download
Average pLDDT?89.64
CAZy50 ID150474
CAZy50 RepYes, UJO22018.1
Structure ClusterSC_CE16_clus13
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5499
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusFulvia
SpeciesFulvia fulva

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTSCSKLVGL  VLSAAATGVV  SLPARALTPV  NRFAFGDSYT  TTAFSTTGPQ  PAYGNPLGNP60
AYGQGTYAGG  PNYVGLLTTK  YNSTFVANYD  FAVGGATISD  SIVTYQGIPA  SNEQVGQRFE120
PQSTQPHVNA  WSSDNTIFSV  FFGINDIGIT  METAQYSNAT  RIDDLLNAYF  QTVDNMYNQG180
ARRFMFVGVP  PMERSPFVQG  NYDPTTQQQW  GNLCNIFNGN  LAQRVKLWQA  SRPESYAAIY240
DFHRYATLVL  HNPTAYGFLN  AECIDTGGQA  CIWWNDYHVG  SRFHDLLAQR  MLPAMNSLEF300
NSWAPTAGVG  YFY313

Predicted 3D structure by AlphaFold2 with pLDDT = 89.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTSCSKLVGL  VLSAAATGVV  SLPARALTPV  NRFAFGDSYT  TTAFSTTGPQ  PAYGNPLGNP60
AYGQGTYAGG  PNYVGLLTTK  YNSTFVANYD  FAVGGATISD  SIVTYQGIPA  SNEQVGQRFE120
PQSTQPHVNA  WSSDNTIFSV  FFGINDIGIT  METAQYSNAT  RIDDLLNAYF  QTVDNMYNQG180
ARRFMFVGVP  PMERSPFVQG  NYDPTTQQQW  GNLCNIFNGN  LAQRVKLWQA  SRPESYAAIY240
DFHRYATLVL  HNPTAYGFLN  AECIDTGGQA  CIWWNDYHVG  SRFHDLLAQR  MLPAMNSLEF300
NSWAPTAGVG  YFY313

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE16(33-291)

MTSCSKLVGL  VLSAAATGVV  SLPARALTPV  NRFAFGDSYT  TTAFSTTGPQ  PAYGNPLGNP60
AYGQGTYAGG  PNYVGLLTTK  YNSTFVANYD  FAVGGATISD  SIVTYQGIPA  SNEQVGQRFE120
PQSTQPHVNA  WSSDNTIFSV  FFGINDIGIT  METAQYSNAT  RIDDLLNAYF  QTVDNMYNQG180
ARRFMFVGVP  PMERSPFVQG  NYDPTTQQQW  GNLCNIFNGN  LAQRVKLWQA  SRPESYAAIY240
DFHRYATLVL  HNPTAYGFLN  AECIDTGGQA  CIWWNDYHVG  SRFHDLLAQR  MLPAMNSLEF300
NSWAPTAGVG  YFY313

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help