CAZyme3D

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Entry ID

Information for CAZyme ID: UIZ26845.1

Basic Information

GenBank IDUIZ26845.1
FamilyGH131
Sequence Length602
UniProt IDA0A425C3I4(99.2,100)Download
Average pLDDT?79.99
CAZy50 ID52175
CAZy50 RepYes, UIZ26845.1
Structure ClusterSC_GH131_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID542832
KingdomEukaryota
PhylumOomycota
Class
OrderPeronosporales
FamilyPeronosporaceae
GenusPeronospora
SpeciesPeronospora effusa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVRFVQSIFV  SSVALLASFL  LFNVNAADEP  LPWNGLFEDL  KMTTIKKKYL  THILTDRNVG60
KVDPDQWLTI  TPNGRSPAYN  GDTGVATLAV  DSEAIFHEQN  NFRRSELVQN  VAGNTKGTTF120
FRVSLMKEVA  FANLKPWQAI  FSESHLYELR  IDASVDPVML  IWYTGGGTET  RWSTEFKIKT180
WYNFGIAVSS  GNIDLYFSEG  DDVLALAKTQ  SYSGDVPTNY  EFHFGLLTLS  DDGSPVKMVE240
GKQDVLSFNG  VSVEDKIPTD  IGSSTPSSKE  STTPANTSTS  TTPAAASKTA  DVTPTETPSV300
TATDTPTTNS  SPTTSNVIAD  DDKPAATTLG  SDASKTKNCK  IRILGMVALA  SAYLAAPAAG360
AENQPLPWSG  RGNGLTPGNI  EATYLTHIMT  MRNNSAYNGV  KNYVDIKQLG  RSPAYNGDTD420
VINIAVDANA  IFKAQTDFRR  TELVQNVETN  TEGSTFFRAS  IMKEDAFYNN  YEWQCMLTES480
HNFEIRVNAT  ASPPTIMYLN  NGTWEAKWET  TFELGTWYNF  GIDITKAAKG  ESSVITLYTS540
TGDDDLKLIR  KDNVVSKFAS  MEELHIGLLT  LSNDKSQPKM  AKQKDIISFN  GVSVEKKVIT600
SA602

Predicted 3D structure by AlphaFold2 with pLDDT = 79.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVRFVQSIFV  SSVALLASFL  LFNVNAADEP  LPWNGLFEDL  KMTTIKKKYL  THILTDRNVG60
KVDPDQWLTI  TPNGRSPAYN  GDTGVATLAV  DSEAIFHEQN  NFRRSELVQN  VAGNTKGTTF120
FRVSLMKEVA  FANLKPWQAI  FSESHLYELR  IDASVDPVML  IWYTGGGTET  RWSTEFKIKT180
WYNFGIAVSS  GNIDLYFSEG  DDVLALAKTQ  SYSGDVPTNY  EFHFGLLTLS  DDGSPVKMVE240
GKQDVLSFNG  VSVEDKIPTD  IGSSTPSSKE  STTPANTSTS  TTPAAASKTA  DVTPTETPSV300
TATDTPTTNS  SPTTSNVIAD  DDKPAATTLG  SDASKTKNCK  IRILGMVALA  SAYLAAPAAG360
AENQPLPWSG  RGNGLTPGNI  EATYLTHIMT  MRNNSAYNGV  KNYVDIKQLG  RSPAYNGDTD420
VINIAVDANA  IFKAQTDFRR  TELVQNVETN  TEGSTFFRAS  IMKEDAFYNN  YEWQCMLTES480
HNFEIRVNAT  ASPPTIMYLN  NGTWEAKWET  TFELGTWYNF  GIDITKAAKG  ESSVITLYTS540
TGDDDLKLIR  KDNVVSKFAS  MEELHIGLLT  LSNDKSQPKM  AKQKDIISFN  GVSVEKKVIT600
SA602

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH131(75-256)+GH131(404-600)

MVRFVQSIFV  SSVALLASFL  LFNVNAADEP  LPWNGLFEDL  KMTTIKKKYL  THILTDRNVG60
KVDPDQWLTI  TPNGRSPAYN  GDTGVATLAV  DSEAIFHEQN  NFRRSELVQN  VAGNTKGTTF120
FRVSLMKEVA  FANLKPWQAI  FSESHLYELR  IDASVDPVML  IWYTGGGTET  RWSTEFKIKT180
WYNFGIAVSS  GNIDLYFSEG  DDVLALAKTQ  SYSGDVPTNY  EFHFGLLTLS  DDGSPVKMVE240
GKQDVLSFNG  VSVEDKIPTD  IGSSTPSSKE  STTPANTSTS  TTPAAASKTA  DVTPTETPSV300
TATDTPTTNS  SPTTSNVIAD  DDKPAATTLG  SDASKTKNCK  IRILGMVALA  SAYLAAPAAG360
AENQPLPWSG  RGNGLTPGNI  EATYLTHIMT  MRNNSAYNGV  KNYVDIKQLG  RSPAYNGDTD420
VINIAVDANA  IFKAQTDFRR  TELVQNVETN  TEGSTFFRAS  IMKEDAFYNN  YEWQCMLTES480
HNFEIRVNAT  ASPPIIMYLN  NGTWDAKWNT  TFELDTWYNF  GIDITKAAKG  ESSVITLYTS540
TGDDDLKLIR  KDNVVSKFAS  MEEFHIGLLT  LSNDKSQPKM  AKQKDIISFN  GVSVEKKVIT600
SA602

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help