Information for CAZyme ID: UIJ62455.1
Basic Information
| GenBank ID | UIJ62455.1 |
| Family | GH51 |
| Sequence Length | 863 |
| UniProt ID | A0A558AM46(100,100) |
| Average pLDDT? | 83.50 |
| CAZy50 ID | 21948 |
| CAZy50 Rep | Yes, UIJ62455.1 |
| Structure Cluster | SC_GH51_clus14 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 715473 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis acidiphila |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MNSERQIFPG PGAGPAVSRR SFVLLTGATG AAALVGGAPV ASAAPARPAP PGPLTTAQSL | 60 |
| GVNATGYDRR MTDAEIPGLL RQAGIGLIRY PGGGNADGFD WRTDGPFTWP LFVQLDQQVG | 120 |
| AAPLITVNYG QTALGPAVAA DWAADAVRRP GWDSRTALWV LGNEGYGPWE IDEHPDSHTP | 180 |
| QSYAQHAREY FEAIHRADRS ARVGFPMTID RDVAAGTGTW VPDPDRWNRT VLSANRDQVD | 240 |
| WIDFHWYPVF GVPVLSNAQI FETVRRIPGA MRYLAGVIAE SGSRAPVFVS ESNISQSEIV | 300 |
| YNAQPVAALY AAATALTFLS HGAHSFLWWQ VHNTDDMNGD FGFLSDGTGS PGPSATTLSA | 360 |
| PARAGDRQLR VTSTDGFHYG HRFTIGSGAG QESRKITAIG GGTVLSAPAA AGSRTIHVGA | 420 |
| VVPFAPGTEI TIGSEATAER GTVKTVGTGA GAAALAAPAA PGDRTLYIVG EGMGGQSIPV | 480 |
| FMPISLAPGA QVVVGSGADA ETVTVASVGT SSSLATTTVA PVSPGEKTVY VAETANTNTG | 540 |
| VAHYVGDLMT VGDGVRGESG VIVAVGTAAA APTTVATGTR AGDGSVRLAQ SANITLGHAI | 600 |
| QLGTGAATER VTVRAVGTDG TLYLTTPQRF AHAAGTAARD LGTGITLDRA LRQPHPAGSA | 660 |
| ARDAGSGLRL TAPVRRRHAG GDQVMTEGTG VTLSGPLTRS HATGEPASSS GITFTPPLSA | 720 |
| AHPEGTPVNE TGLREPPPNT PMPAFWGYVL TSELTRPGAR ITALDSPLSS VLAFGSTRPG | 780 |
| TTAVMLINTD DAAAVTASVA GLASSGPVRT LRYGLTGPVI TESATSLAEV RRGLALASES | 840 |
| ITVLVAASTQ DGQALTLRAT EAS | 863 |
Predicted 3D structure by AlphaFold2 with pLDDT = 83.50 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MNSERQIFPG PGAGPAVSRR SFVLLTGATG AAALVGGAPV ASAAPARPAP PGPLTTAQSL | 60 |
| GVNATGYDRR MTDAEIPGLL RQAGIGLIRY PGGGNADGFD WRTDGPFTWP LFVQLDQQVG | 120 |
| AAPLITVNYG QTALGPAVAA DWAADAVRRP GWDSRTALWV LGNEGYGPWE IDEHPDSHTP | 180 |
| QSYAQHAREY FEAIHRADRS ARVGFPMTID RDVAAGTGTW VPDPDRWNRT VLSANRDQVD | 240 |
| WIDFHWYPVF GVPVLSNAQI FETVRRIPGA MRYLAGVIAE SGSRAPVFVS ESNISQSEIV | 300 |
| YNAQPVAALY AAATALTFLS HGAHSFLWWQ VHNTDDMNGD FGFLSDGTGS PGPSATTLSA | 360 |
| PARAGDRQLR VTSTDGFHYG HRFTIGSGAG QESRKITAIG GGTVLSAPAA AGSRTIHVGA | 420 |
| VVPFAPGTEI TIGSEATAER GTVKTVGTGA GAAALAAPAA PGDRTLYIVG EGMGGQSIPV | 480 |
| FMPISLAPGA QVVVGSGADA ETVTVASVGT SSSLATTTVA PVSPGEKTVY VAETANTNTG | 540 |
| VAHYVGDLMT VGDGVRGESG VIVAVGTAAA APTTVATGTR AGDGSVRLAQ SANITLGHAI | 600 |
| QLGTGAATER VTVRAVGTDG TLYLTTPQRF AHAAGTAARD LGTGITLDRA LRQPHPAGSA | 660 |
| ARDAGSGLRL TAPVRRRHAG GDQVMTEGTG VTLSGPLTRS HATGEPASSS GITFTPPLSA | 720 |
| AHPEGTPVNE TGLREPPPNT PMPAFWGYVL TSELTRPGAR ITALDSPLSS VLAFGSTRPG | 780 |
| TTAVMLINTD DAAAVTASVA GLASSGPVRT LRYGLTGPVI TESATSLAEV RRGLALASES | 840 |
| ITVLVAASTQ DGQALTLRAT EAS | 863 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.