CAZyme3D

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Entry ID

Information for CAZyme ID: UHG90210.1

Basic Information

GenBank IDUHG90210.1
FamilyGH5_36
Sequence Length365
UniProt IDUHG90210.1(MOD)Download
Average pLDDT?91.99
CAZy50 ID123281
CAZy50 RepYes, UHG90210.1
Structure ClusterSC_GH5_clus305
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2898794
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma oryzicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MERRLFLQTS  LTAAVGLNQL  TSVMADADSS  ILPEPKPGKL  PRWRGFNLLE  KFVAGTTGPE60
PAGPYQERDF  EWIANWGFNF  VRLPMSYHCW  ATPDPAHWTE  LNERVLKEVD  QAVDYGKQHK120
IHVNLNLHRI  PGYCVNPPAE  PLDLWTDDRA  LEAAVFHWKH  LAERYKGRPN  REVSFDLINE180
PNTDEAKYIR  VVTALVEGIR  SVDPNRLIIV  DGLQYGNQPV  FDLVNLHVGQ  STRGYLPMNV240
SHYKAEWVPM  LKDAPSPTWP  NTWMNVVWNA  ETLKKITIDP  WKKLQKQGVG  VHVGEWGCYN300
KTPHDVALRY  MEDHLKLWKE  AGWGWALWNF  RGAFGILNSD  RADVTYKEHQ  GMLLDERMLT360
LLQKY365

Predicted 3D structure by AlphaFold2 with pLDDT = 91.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MERRLFLQTS  LTAAVGLNQL  TSVMADADSS  ILPEPKPGKL  PRWRGFNLLE  KFVAGTTGPE60
PAGPYQERDF  EWIANWGFNF  VRLPMSYHCW  ATPDPAHWTE  LNERVLKEVD  QAVDYGKQHK120
IHVNLNLHRI  PGYCVNPPAE  PLDLWTDDRA  LEAAVFHWKH  LAERYKGRPN  REVSFDLINE180
PNTDEAKYIR  VVTALVEGIR  SVDPNRLIIV  DGLQYGNQPV  FDLVNLHVGQ  STRGYLPMNV240
SHYKAEWVPM  LKDAPSPTWP  NTWMNVVWNA  ETLKKITIDP  WKKLQKQGVG  VHVGEWGCYN300
KTPHDVALRY  MEDHLKLWKE  AGWGWALWNF  RGAFGILNSD  RADVTYKEHQ  GMLLDERMLT360
LLQKY365

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_36(45-331)

MERRLFLQTS  LTAAVGLNQL  TSVMADADSS  ILPEPKPGKL  PRWRGFNLLE  KFVAGTTGPE60
PAGPYQERDF  EWIANWGFNF  VRLPMSYHCW  ATPDPAHWTE  LNERVLKEVD  QAVDYGKQHK120
IHVNLNLHRI  PGYCVNPPAE  PLDLWTDDRA  LEAAVFHWKH  LAERYKGRPN  REVSFDLINE180
PNTDEAKYIR  VVTALVEGIR  SVDPNRLIIV  DGLQYGNQPV  FDLVNLHVGQ  STRGYLPMNV240
SHYKAEWVPM  LKDAPSPTWP  NTWMNVVWNA  ETLKKITIDP  WKKLQKQGVG  VHVGEWGCYN300
KTPHDVALRY  MEDHLKLWKE  AGWGWALWNF  RGAFGILNSD  RADVTYKEHQ  GMLLDERMLT360
LLQKY365

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help