Information for CAZyme ID: UFN50335.1
Basic Information
| GenBank ID | UFN50335.1 |
| Family | GH23 |
| Sequence Length | 707 |
| UniProt ID | UFN50335.1(MOD) |
| Average pLDDT? | 79.98 |
| CAZy50 ID | 37882 |
| CAZy50 Rep | Yes, UFN50335.1 |
| Structure Cluster | SC_GH23_clus390 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2897332 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodospirillales |
| Family | Acetobacteraceae |
| Genus | Roseomonas |
| Species | Roseomonas sp. OT10 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MGAQNTNAVA RRPFTLSLHH RRTARVATVM LASLLGSTLP RTGTAQTLPH TPLDLSVTQQ | 60 |
| PAVPSRGNTL TRSASIRILP ATDRRGSWAA TPRRQVASLA EAARSARPQP APQVVLASSS | 120 |
| RAARANPLGR SVRLSEIAVA PALRPGQVAG LPQPLAPSDA TRLRRAFELQ KGGDIAGADR | 180 |
| EISLLEDRRL VGHLLAERWL AKRTEPSPAQ LQSWLAANAD HPDAPAIYAL LAERSPRGAS | 240 |
| LPPAPSDATL AATTDIVPEE STPASRAVVR NQTLDRSVRD RAQSGDATAA LRLINGTRGM | 300 |
| TPAYAALLKG EVAQALFQRG DDTEAFRVAA EAVRNAPGRA LPAFVAGLAA WGRGQFDIAR | 360 |
| PYFEAAARAD DAPAVLRAAA AFWTARAAVR ARQPQLYVSW MLQAAQEPRT FYGLVARRAL | 420 |
| GLPPGFAWER DSAAEIEAAA LAENAGGWRA LALLQVGQKD RAEAELRRLW PAVQGNPMLS | 480 |
| RATLAAATQA GMTEFAAQLA GLAQTEDGRP RDFTRFPVPK LEPLNGYRVD PALIYALARQ | 540 |
| ESNFDPRAVS GAGARGLMQV MPATAAFVAN DSSLGGPLGA QRLHDPAFSL EIGQRYLHHL | 600 |
| AQQEQVKGDL IRVLAGYNAG PGNLQRWQPS NQHRDDPFLF IESIPIDETR NFVQRVLTYS | 660 |
| WIYASRLGLP SPSLDALAAG AFPRFTSAEE VARMVRQQGA VRNAAAH | 707 |
Predicted 3D structure by AlphaFold2 with pLDDT = 79.98 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MGAQNTNAVA RRPFTLSLHH RRTARVATVM LASLLGSTLP RTGTAQTLPH TPLDLSVTQQ | 60 |
| PAVPSRGNTL TRSASIRILP ATDRRGSWAA TPRRQVASLA EAARSARPQP APQVVLASSS | 120 |
| RAARANPLGR SVRLSEIAVA PALRPGQVAG LPQPLAPSDA TRLRRAFELQ KGGDIAGADR | 180 |
| EISLLEDRRL VGHLLAERWL AKRTEPSPAQ LQSWLAANAD HPDAPAIYAL LAERSPRGAS | 240 |
| LPPAPSDATL AATTDIVPEE STPASRAVVR NQTLDRSVRD RAQSGDATAA LRLINGTRGM | 300 |
| TPAYAALLKG EVAQALFQRG DDTEAFRVAA EAVRNAPGRA LPAFVAGLAA WGRGQFDIAR | 360 |
| PYFEAAARAD DAPAVLRAAA AFWTARAAVR ARQPQLYVSW MLQAAQEPRT FYGLVARRAL | 420 |
| GLPPGFAWER DSAAEIEAAA LAENAGGWRA LALLQVGQKD RAEAELRRLW PAVQGNPMLS | 480 |
| RATLAAATQA GMTEFAAQLA GLAQTEDGRP RDFTRFPVPK LEPLNGYRVD PALIYALARQ | 540 |
| ESNFDPRAVS GAGARGLMQV MPATAAFVAN DSSLGGPLGA QRLHDPAFSL EIGQRYLHHL | 600 |
| AQQEQVKGDL IRVLAGYNAG PGNLQRWQPS NQHRDDPFLF IESIPIDETR NFVQRVLTYS | 660 |
| WIYASRLGLP SPSLDALAAG AFPRFTSAEE VARMVRQQGA VRNAAAH | 707 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.