CAZyme3D

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Entry ID

Information for CAZyme ID: UDQ96996.1

Basic Information

GenBank IDUDQ96996.1
FamilyPL29
Sequence Length570
UniProt IDUDQ96996.1(MOD)Download
Average pLDDT?92.85
CAZy50 ID56607
CAZy50 RepYes, UDQ96996.1
Structure ClusterSC_PL29_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2886196
KingdomBacteria
PhylumLentisphaerota
Class
Order
Family
Genus
SpeciesLentisphaerae bacterium WC36

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKKITNTVL  LAALCGIGVV  FSGCQHHEAA  TWIKFKEQKK  ANLPTDLADY  SYAGYKFGNC60
EIPDKLNWKV  FNVIDYGAVP  NDQKSDKEAI  QKAVDAAEAN  GSGIIFFPPG  VFRVSEEPNV120
PNGIYINSSN  ILIKGSGSTP  GGTVIYMKHA  HVPAEPNVLW  KVSRVFNFQP  ADKKREFSIS180
NRSKLVPLAK  IVKNVQRDQF  SVIVSEPRKF  RVGQSVMIAT  QSKILNRERL  AGLCTRPIWK240
EINEKGIAIA  EKYVIKKVNG  NELTFTAPLK  STMTIDLDWK  IYDYPTLENW  GVEDIHFVGN300
FREKFIHHKD  ACHDSGFGMI  SMRQGVNCWI  RRNRVTNSTN  AFSFTGCIGS  SMLLNSVDGY360
QGHTNFTTNW  GYGNLIGLSQ  DFTDIGTWHG  PGISHEMTGA  VVWRYTSLAK  FYGGPDYHAR420
FPHTSLWDNS  IANLNNSGGN  YTRLPLHLND  LTYWNFTPTR  AHKNIDFWGL  PVKDEDRKKK480
YFGLYIAYPN  IIGFNSTNST  INEKHVNLLE  SFGKKVYPRS  LYEDQLQLRL  GRLPKWVKDS540
KKEWKSLQKV  YAREAKEAKN  ESYLNNLLKN  570

Predicted 3D structure by AlphaFold2 with pLDDT = 92.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRKKITNTVL  LAALCGIGVV  FSGCQHHEAA  TWIKFKEQKK  ANLPTDLADY  SYAGYKFGNC60
EIPDKLNWKV  FNVIDYGAVP  NDQKSDKEAI  QKAVDAAEAN  GSGIIFFPPG  VFRVSEEPNV120
PNGIYINSSN  ILIKGSGSTP  GGTVIYMKHA  HVPAEPNVLW  KVSRVFNFQP  ADKKREFSIS180
NRSKLVPLAK  IVKNVQRDQF  SVIVSEPRKF  RVGQSVMIAT  QSKILNRERL  AGLCTRPIWK240
EINEKGIAIA  EKYVIKKVNG  NELTFTAPLK  STMTIDLDWK  IYDYPTLENW  GVEDIHFVGN300
FREKFIHHKD  ACHDSGFGMI  SMRQGVNCWI  RRNRVTNSTN  AFSFTGCIGS  SMLLNSVDGY360
QGHTNFTTNW  GYGNLIGLSQ  DFTDIGTWHG  PGISHEMTGA  VVWRYTSLAK  FYGGPDYHAR420
FPHTSLWDNS  IANLNNSGGN  YTRLPLHLND  LTYWNFTPTR  AHKNIDFWGL  PVKDEDRKKK480
YFGLYIAYPN  IIGFNSTNST  INEKHVNLLE  SFGKKVYPRS  LYEDQLQLRL  GRLPKWVKDS540
KKEWKSLQKV  YAREAKEAKN  ESYLNNLLKN  570

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL29(70-377)

MRKKITNTVL  LAALCGIGVV  FSGCQHHEAA  TWIKFKEQKK  ANLPTDLADY  SYAGYKFGNC60
EIPDKLNWKV  FNVIDYGAVP  NDQKSDKEAI  QKAVDAAEAN  GSGIIFFPPG  VFRVSEEPNV120
PNGIYINSSN  ILIKGSGSTP  GGTVIYMKHA  HVPAEPNVLW  KVSRVFNFQP  ADKKREFSIS180
NRSKLVPLAK  IVKNVQRDQF  SVIVSEPRKF  RVGQSVMIAT  QSKILNRERL  AGLCTRPIWK240
EINEKGIAIA  EKYVIKKVNG  NELTFTAPLK  STMTIDLDWK  IYDYPTLENW  GVEDIHFVGN300
FREKFIHHKD  ACHDSGFGMI  SMRQGVNCWI  RRNRVTNSTN  AFSFTGCIGS  SMLLNSVDGY360
QGHTNFTTNW  GYGNLIGLSQ  DFTDIGTWHG  PGISHEMTGA  VVWRYTSLAK  FYGGPDYHAR420
FPHTSLWDNS  IANLNNSGGN  YTRLPLHLND  LTYWNFTPTR  AHKNIDFWGL  PVKDEDRKKK480
YFGLYIAYPN  IIGFNSTNST  INEKHVNLLE  SFGKKVYPRS  LYEDQLQLRL  GRLPKWVKDS540
KKEWKSLQKV  YAREAKEAKN  ESYLNNLLKN  570

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help