CAZyme3D

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Entry ID

Information for CAZyme ID: UBM61221.1

Basic Information

GenBank IDUBM61221.1
FamilyGH163
Sequence Length740
UniProt IDUBM61221.1(MOD)Download
Average pLDDT?94.18
CAZy50 ID33917
CAZy50 RepYes, UBM61221.1
Structure ClusterSC_GH163_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2875962
KingdomBacteria
PhylumBacteroidota
Class
OrderCandidatus Sulfidibacteriales
Family
GenusCandidatus Sulfidibacterium
SpeciesCandidatus Sulfidibacterium hydrothermale

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRLSFLLVL  IIFLQACSSH  LEKEYVIVQP  AHADTTVVHA  ARQLQNYWEK  ITGRRIAIIH60
HTPRKRTGIF  LGHQMVLPAY  NDSVRKLKKD  GFIIAINKKG  IFLEGKTGLS  TLYAVNTFLE120
EKLGCIKLSS  TEDYIPHHDS  IRLAPGFKKY  NPAFDFRCVY  FPGGRNPAYR  QWYKLNWINV180
FGMYVHTFNK  LIPPKIYFKE  HPEYFSLVNG  RRMEDGQLCL  SNPAVIKLLI  KNLGEAINKK240
PDKKYWSVSQ  NDEYNYCECP  KCQKLYKKYG  AVSGAYIAAV  NKVAKAFPDK  IISTLAYQFT300
RKAPTGIKPD  SNVNIMLCTI  ECSRSKPLDQ  MDGPHSFFHD  LKDWSHLTHN  IYLWNYVVQF360
KNYLCPFPNF  PVLQPNIQLF  KKYGANMIFE  QGSGRYWSDL  MELKQYLLSK  LEWNPDANVD420
SLVHIFVHAY  YGNAAKYILD  YYYTMNRVMQ  QHKNDQFLNI  YGFPSDYTGS  FLSPHLMNYY480
EAVMDSAEQA  VAGNPVLLRR  VKRTRLSVDF  AWVDIAVNSH  FKQMPAIIDS  SGKKVINPKI540
IRLLNRMEQV  AKSDPRISVR  ERHFSVSDYK  NYVLNNLRRE  IMPNKLAQAT  VTLETKPSPK600
YPVGGAKALT  DNLMGALDFH  HNWLGFEGDD  MIADFYFKKP  VTLSHIEMNF  LKAINSWVFL660
PVNVKLEVSN  DGKHYRLLQE  KKGDNSDHSF  LVKSVPFNFR  FSPVKVRYLR  VVATSMKTCP720
QWHRGYGNPS  WIFTDEIIGN  740

Predicted 3D structure by AlphaFold2 with pLDDT = 94.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKRLSFLLVL  IIFLQACSSH  LEKEYVIVQP  AHADTTVVHA  ARQLQNYWEK  ITGRRIAIIH60
HTPRKRTGIF  LGHQMVLPAY  NDSVRKLKKD  GFIIAINKKG  IFLEGKTGLS  TLYAVNTFLE120
EKLGCIKLSS  TEDYIPHHDS  IRLAPGFKKY  NPAFDFRCVY  FPGGRNPAYR  QWYKLNWINV180
FGMYVHTFNK  LIPPKIYFKE  HPEYFSLVNG  RRMEDGQLCL  SNPAVIKLLI  KNLGEAINKK240
PDKKYWSVSQ  NDEYNYCECP  KCQKLYKKYG  AVSGAYIAAV  NKVAKAFPDK  IISTLAYQFT300
RKAPTGIKPD  SNVNIMLCTI  ECSRSKPLDQ  MDGPHSFFHD  LKDWSHLTHN  IYLWNYVVQF360
KNYLCPFPNF  PVLQPNIQLF  KKYGANMIFE  QGSGRYWSDL  MELKQYLLSK  LEWNPDANVD420
SLVHIFVHAY  YGNAAKYILD  YYYTMNRVMQ  QHKNDQFLNI  YGFPSDYTGS  FLSPHLMNYY480
EAVMDSAEQA  VAGNPVLLRR  VKRTRLSVDF  AWVDIAVNSH  FKQMPAIIDS  SGKKVINPKI540
IRLLNRMEQV  AKSDPRISVR  ERHFSVSDYK  NYVLNNLRRE  IMPNKLAQAT  VTLETKPSPK600
YPVGGAKALT  DNLMGALDFH  HNWLGFEGDD  MIADFYFKKP  VTLSHIEMNF  LKAINSWVFL660
PVNVKLEVSN  DGKHYRLLQE  KKGDNSDHSF  LVKSVPFNFR  FSPVKVRYLR  VVATSMKTCP720
QWHRGYGNPS  WIFTDEIIGN  740

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(191-441)+CBM32(604-717)

MKRLSFLLVL  IIFLQACSSH  LEKEYVIVQP  AHADTTVVHA  ARQLQNYWEK  ITGRRIAIIH60
HTPRKRTGIF  LGHQMVLPAY  NDSVRKLKKD  GFIIAINKKG  IFLEGKTGLS  TLYAVNTFLE120
EKLGCIKLSS  TEDYIPHHDS  IRLAPGFKKY  NPAFDFRCVY  FPGGRNPAYR  QWYKLNWINV180
FGMYVHTFNK  LIPPKIYFKE  HPEYFSLVNG  RRMEDGQLCL  SNPAVIKLLI  KNLGEAINKK240
PDKKYWSVSQ  NDEYNYCECP  KCQKLYKKYG  AVSGAYIAAV  NKVAKAFPDK  IISTLAYQFT300
RKAPTGIKPD  SNVNIMLCTI  ECSRSKPLDQ  MDGPHSFFHD  LKDWSHLTHN  IYLWNYVVQF360
KNYLCPFPNF  PVLQPNIQLF  KKYGANMIFE  QGSGRYWSDL  MELKQYLLSK  LEWNPDANVD420
SLVHIFVHAY  YGNAAKYILD  YYYTMNRVMQ  QHKNDQFLNI  YGFPSDYTGS  FLSPHLMNYY480
EAVMDSAEQA  VAGNPVLLRR  VKRTRLSVDF  AWVDIAVNSH  FKQMPAIIDS  SGKKVINPKI540
IRLLNRMEQV  AKSDPRISVR  ERHFSVSDYK  NYVLNNLRRE  IMPNKLAQAT  VTLETKPSPK600
YPVGGAKALT  DNLMGALDFH  HNWLGFEGDD  MIADFYFKKP  VTLSHIEMNF  LKAINSWVFL660
PVNVKLEVSN  DGKHYRLLQE  KKGDNSDHSF  LVKSVPFNFR  FSPVKVRYLR  VVATSMKTCP720
QWHRGYGNPS  WIFTDEIIGN  740

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help