Information for CAZyme ID: UBM61221.1
Basic Information
GenBank ID | UBM61221.1 |
Family | GH163 |
Sequence Length | 740 |
UniProt ID | UBM61221.1(MOD)![]() |
Average pLDDT? | 94.18 |
CAZy50 ID | 33917 |
CAZy50 Rep | Yes, UBM61221.1 |
Structure Cluster | SC_GH163_clus14 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2875962 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | |
Order | Candidatus Sulfidibacteriales |
Family | |
Genus | Candidatus Sulfidibacterium |
Species | Candidatus Sulfidibacterium hydrothermale |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKRLSFLLVL IIFLQACSSH LEKEYVIVQP AHADTTVVHA ARQLQNYWEK ITGRRIAIIH | 60 |
HTPRKRTGIF LGHQMVLPAY NDSVRKLKKD GFIIAINKKG IFLEGKTGLS TLYAVNTFLE | 120 |
EKLGCIKLSS TEDYIPHHDS IRLAPGFKKY NPAFDFRCVY FPGGRNPAYR QWYKLNWINV | 180 |
FGMYVHTFNK LIPPKIYFKE HPEYFSLVNG RRMEDGQLCL SNPAVIKLLI KNLGEAINKK | 240 |
PDKKYWSVSQ NDEYNYCECP KCQKLYKKYG AVSGAYIAAV NKVAKAFPDK IISTLAYQFT | 300 |
RKAPTGIKPD SNVNIMLCTI ECSRSKPLDQ MDGPHSFFHD LKDWSHLTHN IYLWNYVVQF | 360 |
KNYLCPFPNF PVLQPNIQLF KKYGANMIFE QGSGRYWSDL MELKQYLLSK LEWNPDANVD | 420 |
SLVHIFVHAY YGNAAKYILD YYYTMNRVMQ QHKNDQFLNI YGFPSDYTGS FLSPHLMNYY | 480 |
EAVMDSAEQA VAGNPVLLRR VKRTRLSVDF AWVDIAVNSH FKQMPAIIDS SGKKVINPKI | 540 |
IRLLNRMEQV AKSDPRISVR ERHFSVSDYK NYVLNNLRRE IMPNKLAQAT VTLETKPSPK | 600 |
YPVGGAKALT DNLMGALDFH HNWLGFEGDD MIADFYFKKP VTLSHIEMNF LKAINSWVFL | 660 |
PVNVKLEVSN DGKHYRLLQE KKGDNSDHSF LVKSVPFNFR FSPVKVRYLR VVATSMKTCP | 720 |
QWHRGYGNPS WIFTDEIIGN | 740 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.18 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKRLSFLLVL IIFLQACSSH LEKEYVIVQP AHADTTVVHA ARQLQNYWEK ITGRRIAIIH | 60 |
HTPRKRTGIF LGHQMVLPAY NDSVRKLKKD GFIIAINKKG IFLEGKTGLS TLYAVNTFLE | 120 |
EKLGCIKLSS TEDYIPHHDS IRLAPGFKKY NPAFDFRCVY FPGGRNPAYR QWYKLNWINV | 180 |
FGMYVHTFNK LIPPKIYFKE HPEYFSLVNG RRMEDGQLCL SNPAVIKLLI KNLGEAINKK | 240 |
PDKKYWSVSQ NDEYNYCECP KCQKLYKKYG AVSGAYIAAV NKVAKAFPDK IISTLAYQFT | 300 |
RKAPTGIKPD SNVNIMLCTI ECSRSKPLDQ MDGPHSFFHD LKDWSHLTHN IYLWNYVVQF | 360 |
KNYLCPFPNF PVLQPNIQLF KKYGANMIFE QGSGRYWSDL MELKQYLLSK LEWNPDANVD | 420 |
SLVHIFVHAY YGNAAKYILD YYYTMNRVMQ QHKNDQFLNI YGFPSDYTGS FLSPHLMNYY | 480 |
EAVMDSAEQA VAGNPVLLRR VKRTRLSVDF AWVDIAVNSH FKQMPAIIDS SGKKVINPKI | 540 |
IRLLNRMEQV AKSDPRISVR ERHFSVSDYK NYVLNNLRRE IMPNKLAQAT VTLETKPSPK | 600 |
YPVGGAKALT DNLMGALDFH HNWLGFEGDD MIADFYFKKP VTLSHIEMNF LKAINSWVFL | 660 |
PVNVKLEVSN DGKHYRLLQE KKGDNSDHSF LVKSVPFNFR FSPVKVRYLR VVATSMKTCP | 720 |
QWHRGYGNPS WIFTDEIIGN | 740 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.