CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: UBM33827.1

Basic Information

GenBank IDUBM33827.1
FamilyGH5_5
Sequence Length369
UniProt IDUBM33827.1(MOD)Download
Average pLDDT?92.61
CAZy50 ID120477
CAZy50 RepYes, UBM33827.1
Structure ClusterSC_GH5_clus183
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3119568
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPirellulales
FamilyPirellulaceae
GenusBremerella
SpeciesBremerella sp. TYQ1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTLTRRGFVA  TGVFLTANTM  LNGCQESVTE  PMPELPFDVT  VNLAGAEFGM  QQPGYSNENP60
GKLHQDYTFN  SLATVRYFAE  RGIRTFRVPI  AWERLQPNLR  QDLNKEYLSN  ILLLLTWLEE120
CDATAIIDLH  NYCRYRIAHR  KKVVEAVMDE  TYDGKVLVST  ADLCDLWRRL  ATALSPRESV180
ACFGIMNEPH  DLGSLDWKAA  SNSVVDAIRQ  VDQQKWIAVC  GRSWASAARF  QSANGNKPWI240
SDVANKTVYE  AHAYFDSDQS  GKYRLSYDEE  LKRDPKLAQR  PIQVLSPFVQ  WCQENKVPGY300
LGEIGVPNTD  PRWLELVASA  SKQLHEAHLA  AGYWAAGEWW  NDYPLSVQPS  DFASMLSPPL360
ETMLRQMAG369

Predicted 3D structure by AlphaFold2 with pLDDT = 92.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTLTRRGFVA  TGVFLTANTM  LNGCQESVTE  PMPELPFDVT  VNLAGAEFGM  QQPGYSNENP60
GKLHQDYTFN  SLATVRYFAE  RGIRTFRVPI  AWERLQPNLR  QDLNKEYLSN  ILLLLTWLEE120
CDATAIIDLH  NYCRYRIAHR  KKVVEAVMDE  TYDGKVLVST  ADLCDLWRRL  ATALSPRESV180
ACFGIMNEPH  DLGSLDWKAA  SNSVVDAIRQ  VDQQKWIAVC  GRSWASAARF  QSANGNKPWI240
SDVANKTVYE  AHAYFDSDQS  GKYRLSYDEE  LKRDPKLAQR  PIQVLSPFVQ  WCQENKVPGY300
LGEIGVPNTD  PRWLELVASA  SKQLHEAHLA  AGYWAAGEWW  NDYPLSVQPS  DFASMLSPPL360
ETMLRQMAG369

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(40-343)

MTLTRRGFVA  TGVFLTANTM  LNGCQESVTE  PMPELPFDVT  VNLAGAEFGM  QQPGYSNENP60
GKLHQDYTFN  SLATVRYFAE  RGIRTFRVPI  AWERLQPNLR  QDLNKEYLSN  ILLLLTWLEE120
CDATAIIDLH  NYCRYRIAHR  KKVVEAVMDE  TYDGKVLVST  ADLCDLWRRL  ATALSPRESV180
ACFGIMNEPH  DLGSLDWKAA  SNSVVDAIRQ  VDQQKWIAVC  GRSWASAARF  QSANGNKPWI240
SDVANKTVYE  AHAYFDSDQS  GKYRLSYDEE  LKRDPKLAQR  PIQVLSPFVQ  WCQENKVPGY300
LGEIGVPNTD  PRWLELVASA  SKQLHEAHLA  AGYWAAGEWW  NDYPLSVQPS  DFASMLSPPL360
ETMLRQMAG369

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help