Information for CAZyme ID: SQG79294.1
Basic Information
| GenBank ID | SQG79294.1 |
| Family | GT2, GT32 |
| Sequence Length | 647 |
| UniProt ID | A0A1S5WCA5(100,100) |
| Average pLDDT? | 89.73 |
| CAZy50 ID | 45629 |
| CAZy50 Rep | Yes, SQG79294.1 |
| Structure Cluster | SC_GT2_clus1216, SC_GT32_clus142 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 315405 |
| Kingdom | Bacteria |
| Phylum | Bacillota |
| Class | Bacilli |
| Order | Lactobacillales |
| Family | Streptococcaceae |
| Genus | Streptococcus |
| Species | Streptococcus gallolyticus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MMNKKVKISI VVPVYNQEKY LDISIPSLLS QTYTNIEIII VNDGSIDSSD EIIEKYSSND | 60 |
| NRIKVIEKNN GGLVDATIYG IKNATGDYVA FLDPDDRVDS DFIENFINEL TEGADIISMG | 120 |
| YYLDNLGTLT PCYLYKTGIY TGEKLKELTR NFIYESGNIS VSNKIFISRW NKLYRAELVK | 180 |
| EVIKDFEACK DISLGEDTIF TSLVLNKSKK VKVIEYPNSY FYNIGNQNSM MNSSDIRAGI | 240 |
| QKSRIAYNKI KQLSNISEDQ ALALYFFLIE NLFQKKKKVM DKSFDELFKY LKKDTLYQKA | 300 |
| LSQMVIGCSN KIKKIELNSR KLLTGNQYMF CFSTLSNIKS LAKFFLREIP SRIQDIRKSG | 360 |
| FYKAYRFAEY RKDRRNARED LINKLPIVEQ EVLPFLKKYV GKSTPVEETA LSKNIFVFWW | 420 |
| DGFESAPNIV RKCLESVKKY NPDSNIIEVS KNNFEDYTDI HPEILKGFYK GDISIQTFSD | 480 |
| ILRFNLLKNN GGAWIDATIL FLEKFDIFEE LKDKSFATIS FTSSMNFLKY KNEVCSWSGY | 540 |
| FIASRKGGYF VTVMNDLFEE YYLLYGKFPF YFFIDALFVI CKINKIDNDV LSKTKFVCAD | 600 |
| MFLLPKLYDK DFNIYSLKQL TKIPQKLSWS HKGNSKLTNS FFNRLEL | 647 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.73 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MMNKKVKISI VVPVYNQEKY LDISIPSLLS QTYTNIEIII VNDGSIDSSD EIIEKYSSND | 60 |
| NRIKVIEKNN GGLVDATIYG IKNATGDYVA FLDPDDRVDS DFIENFINEL TEGADIISMG | 120 |
| YYLDNLGTLT PCYLYKTGIY TGEKLKELTR NFIYESGNIS VSNKIFISRW NKLYRAELVK | 180 |
| EVIKDFEACK DISLGEDTIF TSLVLNKSKK VKVIEYPNSY FYNIGNQNSM MNSSDIRAGI | 240 |
| QKSRIAYNKI KQLSNISEDQ ALALYFFLIE NLFQKKKKVM DKSFDELFKY LKKDTLYQKA | 300 |
| LSQMVIGCSN KIKKIELNSR KLLTGNQYMF CFSTLSNIKS LAKFFLREIP SRIQDIRKSG | 360 |
| FYKAYRFAEY RKDRRNARED LINKLPIVEQ EVLPFLKKYV GKSTPVEETA LSKNIFVFWW | 420 |
| DGFESAPNIV RKCLESVKKY NPDSNIIEVS KNNFEDYTDI HPEILKGFYK GDISIQTFSD | 480 |
| ILRFNLLKNN GGAWIDATIL FLEKFDIFEE LKDKSFATIS FTSSMNFLKY KNEVCSWSGY | 540 |
| FIASRKGGYF VTVMNDLFEE YYLLYGKFPF YFFIDALFVI CKINKIDNDV LSKTKFVCAD | 600 |
| MFLLPKLYDK DFNIYSLKQL TKIPQKLSWS HKGNSKLTNS FFNRLEL | 647 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.