CAZyme3D

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Entry ID

Information for CAZyme ID: SMY27403.1

Basic Information

GenBank IDSMY27403.1
FamilyCBM18
Sequence Length491
UniProt IDA0A1Y6LSL8(100,100)Download
Average pLDDT?61.58
CAZy50 ID70799
CAZy50 RepYes, SMY27403.1
Structure ClusterSC_CBM18_clus21
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1276529
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusZymoseptoria
SpeciesZymoseptoria tritici

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQLSIALSLV  SVLVHAQQAP  VYGGDVTTTP  PPPAYEEPAT  STSTFFSTVD  TCPGNSCSTT60
VSSSSALATV  SAPPTIITKR  IPQCALNCIV  GYDLGGCDPE  DVTCICSNIA  LIDRYSCCLS120
QQCLSQDDIN  AIRDVGDLLC  SCFGVFDAVP  NNASCLAVDP  PRPVQQTISP  NGVCGGPNNY180
NCVGSEYGDC  CSQYGFCGSG  YEFCAAQNCL  TDYGSCNPAG  QPPYSTSPAS  AAPPPTYTQT240
PSPNGYCGSS  NQANCAGTVF  GDCCSIYGYC  GNGTEYCAAD  TCQTGYGNCG  SPYVDAPNVV300
YTTAAPAATT  GVCSNILESV  TDQLTLPTTT  STSPATYSAP  PVTTTSTNRP  TPTGLPLCAQ360
GCIATYAESA  CYGGCSPLDV  ACICSNKPLL  ADFSCCVSQF  CDPGQIEDVR  LFANTICSRA420
GVSSIPQEAT  CLPTAIAASS  TIPGCATPFP  TTTTMSSMTM  GPMTTCGVCT  SCERVTTVIP480
VMEASSYTAV  F491

Predicted 3D structure by AlphaFold2 with pLDDT = 61.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQLSIALSLV  SVLVHAQQAP  VYGGDVTTTP  PPPAYEEPAT  STSTFFSTVD  TCPGNSCSTT60
VSSSSALATV  SAPPTIITKR  IPQCALNCIV  GYDLGGCDPE  DVTCICSNIA  LIDRYSCCLS120
QQCLSQDDIN  AIRDVGDLLC  SCFGVFDAVP  NNASCLAVDP  PRPVQQTISP  NGVCGGPNNY180
NCVGSEYGDC  CSQYGFCGSG  YEFCAAQNCL  TDYGSCNPAG  QPPYSTSPAS  AAPPPTYTQT240
PSPNGYCGSS  NQANCAGTVF  GDCCSIYGYC  GNGTEYCAAD  TCQTGYGNCG  SPYVDAPNVV300
YTTAAPAATT  GVCSNILESV  TDQLTLPTTT  STSPATYSAP  PVTTTSTNRP  TPTGLPLCAQ360
GCIATYAESA  CYGGCSPLDV  ACICSNKPLL  ADFSCCVSQF  CDPGQIEDVR  LFANTICSRA420
GVSSIPQEAT  CLPTAIAASS  TIPGCATPFP  TTTTMSSMTM  GPMTTCGVCT  SCERVTTVIP480
VMEASSYTAV  F491

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MQLSIALSLV  SVLVHAQQAP  VYGGDVTTTP  PPPAYEEPAT  STSTFFSTVD  TCPGNSCSTT60
VSSSSALATV  SAPPTIITKR  IPQCALNCIV  GYDLGGCDPE  DVTCICSNIA  LIDRYSCCLS120
QQCLSQDDIN  AIRDVGDLLC  SCFGVFDAVP  NNASCLAVDP  PRPVQQTISP  NGVCGGPNNY180
NCVGSEYGDC  CSQYGFCGSG  YEFCAAQNCL  TDYGSCNPAG  QPPYSTSPAS  AAPPPTYTQT240
PSPNGYCGSS  NQANCAGTVF  GDCCSIYGYC  GNGTEYCAAD  TCQTGYGNCG  SPYVDAPNVV300
YTTAAPAATT  GVCSNILESV  TDQLTLPTTT  STSPATYSAP  PVTTTSTNRP  TPTGLPLCAQ360
GCIATYAESA  CYGGCSPLDV  ACICSNKPLL  ADFSCCVSQF  CDPGQIEDVR  LFANTICSRA420
GVSSIPQEAT  CLPTAIAASS  TIPGCATPFP  TTTTMSSMTM  GPMTTCGVCT  SCERVTTVIP480
VMEASSYTAV  F491

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help