CAZyme3D

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Entry ID

Information for CAZyme ID: SMY22899.1

Basic Information

GenBank IDSMY22899.1
FamilyAA3
Sequence Length689
UniProt IDA0A1Y6LGW7(100,100)Download
Average pLDDT?86.21
CAZy50 ID40003
CAZy50 RepYes, SMY22899.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1276529
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusZymoseptoria
SpeciesZymoseptoria tritici

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNNGQPDRRH  AELQEVFTLF  LRLRSTFAPS  TLITESIAFG  FRTTAKAICV  YRGDLDPTGR60
ADHELVAASH  GAHSEAATQY  EYIVVGSGAG  GGTLASRLAR  EGHSTLLIEA  GDDQSSNDNT120
TIPLFQSLVT  GDPEIQWDFF  VNHYQDQSRA  ARDPKYTKGK  GCLYPRAQIV  GGCVTHNALI180
FIRAHDSDWD  GIARITGDSS  WSARNMDKYL  DKVYEWQPVN  PTDPSILVRD  TQLVRHLVAG240
AAVLSPSLFR  SIIPQGLSSL  LGLDRLNPIV  GISNALLGDA  NARTRNRDST  TGLYPIPLTA300
EGGARKSIRE  HIKDTIAQGY  PLTLKTNTFV  TKVLFDESGD  QLRACGVEYL  EGKHLYRASP360
KSGGKGTPGS  VRATKEVILA  GGTFNTVQLL  KLSGIGPKKE  LESFKIPVKV  NLPGVGRNMQ420
DRYEIGLNVQ  HEKDFSITDG  CRLDAKPHDK  CYKQWKQNPN  ILAQRGAYAS  NGLAATMIGH480
SDYADNSDVD  LWMFSSPSNF  RGYFPQWYDT  LLAQHNWFSW  YTLKAHTRNT  AGTVKLRSAD540
PLDVPQIDFN  YFDTGTTANG  AADKDLASMV  KALRTCRKAL  AKYNDDVIAR  LLPGSKFVEK600
EPGPHVQSDE  DLGQYIKDRA  WGHHACGTTK  IGADGDKMAV  LDSKFRVRGV  KALRIADAGV660
FPKIPGVFIT  APIFVMAEKA  ADTILHGGD689

Predicted 3D structure by AlphaFold2 with pLDDT = 86.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNNGQPDRRH  AELQEVFTLF  LRLRSTFAPS  TLITESIAFG  FRTTAKAICV  YRGDLDPTGR60
ADHELVAASH  GAHSEAATQY  EYIVVGSGAG  GGTLASRLAR  EGHSTLLIEA  GDDQSSNDNT120
TIPLFQSLVT  GDPEIQWDFF  VNHYQDQSRA  ARDPKYTKGK  GCLYPRAQIV  GGCVTHNALI180
FIRAHDSDWD  GIARITGDSS  WSARNMDKYL  DKVYEWQPVN  PTDPSILVRD  TQLVRHLVAG240
AAVLSPSLFR  SIIPQGLSSL  LGLDRLNPIV  GISNALLGDA  NARTRNRDST  TGLYPIPLTA300
EGGARKSIRE  HIKDTIAQGY  PLTLKTNTFV  TKVLFDESGD  QLRACGVEYL  EGKHLYRASP360
KSGGKGTPGS  VRATKEVILA  GGTFNTVQLL  KLSGIGPKKE  LESFKIPVKV  NLPGVGRNMQ420
DRYEIGLNVQ  HEKDFSITDG  CRLDAKPHDK  CYKQWKQNPN  ILAQRGAYAS  NGLAATMIGH480
SDYADNSDVD  LWMFSSPSNF  RGYFPQWYDT  LLAQHNWFSW  YTLKAHTRNT  AGTVKLRSAD540
PLDVPQIDFN  YFDTGTTANG  AADKDLASMV  KALRTCRKAL  AKYNDDVIAR  LLPGSKFVEK600
EPGPHVQSDE  DLGQYIKDRA  WGHHACGTTK  IGADGDKMAV  LDSKFRVRGV  KALRIADAGV660
FPKIPGVFIT  APIFVMAEKA  ADTILHGGD689

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(79-685)

MNNGQPDRRH  AELQEVFTLF  LRLRSTFAPS  TLITESIAFG  FRTTAKAICV  YRGDLDPTGR60
ADHELVAASH  GAHSEAATQY  EYIVVGSGAG  GGTLASRLAR  EGHSTLLIEA  GDDQSSNDNT120
TIPLFQSLVT  GDPEIQWDFF  VNHYQDQSRA  ARDPKYTKGK  GCLYPRAQIV  GGCVTHNALI180
FIRAHDSDWD  GIARITGDSS  WSARNMDKYL  DKVYEWQPVN  PTDPSILVRD  TQLVRHLVAG240
AAVLSPSLFR  SIIPQGLSSL  LGLDRLNPIV  GISNALLGDA  NARTRNRDST  TGLYPIPLTA300
EGGARKSIRE  HIKDTIAQGY  PLTLKTNTFV  TKVLFDESGD  QLRACGVEYL  EGKHLYRASP360
KSGGKGTPGS  VRATKEVILA  GGTFNTVQLL  KLSGIGPKKE  LESFKIPVKV  NLPGVGRNMQ420
DRYEIGLNVQ  HEKDFSITDG  CRLDAKPHDK  CYKQWKQNPN  ILAQRGAYAS  NGLAATMIGH480
SDYADNSDVD  LWMFSSPSNF  RGYFPQWYDT  LLAQHNWFSW  YTLKAHTRNT  AGTVKLRSAD540
PLDVPQIDFN  YFDTGTTANG  AADKDLASMV  KALRTCRKAL  AKYNDDVIAR  LLPGSKFVEK600
EPGPHVQSDE  DLGQYIKDRA  WGHHACGTTK  IGADGDKMAV  LDSKFRVRGV  KALRIADAGV660
FPKIPGVFIT  APIFVMAEKA  ADTILHGGD689

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help