CAZyme3D

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Entry ID

Information for CAZyme ID: SMY20441.1

Basic Information

GenBank IDSMY20441.1
FamilyAA3
Sequence Length658
UniProt IDA0A1Y6LD15(100,100)Download
Average pLDDT?74.95
CAZy50 ID44062
CAZy50 RepYes, SMY20441.1
Structure ClusterSC_AA3_clus11
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1276529
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusZymoseptoria
SpeciesZymoseptoria tritici

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEPPYTHIVV  GAGSAGCVVA  ARIAENPSLN  VLLLEAGPEP  EISTGSQNIR  RVPMKGQSET60
FDDRIDWNIE  VGFPDGGSMH  VAQAKVVGGG  SSINGGTALR  NAVKDCEEWV  LLGNDAWGWD120
SVEPVYDFLE  KDDLRPTKGF  HPLVRTKIEG  SGLIQQAFVA  GAIEAGLPWV  ADLNATGAEG180
TGASPVCRNG  ERRISAANTF  IDPIRGRRNF  RIQSNAFVDR  VLFSDRRATG  VKLVDGSQIS240
ASCEVILAAS  ALFSPAILQR  SGVGPSALLE  SLAIPVLQDL  PVGHNLSDHP  CIPVVARPKP300
DAYLESDFSL  QMQARWSSTM  NQKAIDLQMV  CFSYLFVAPG  APQPGASSRP  QRSLGGSETG360
HVAGIGCNLN  KPTSHGSVQI  GSKDPLQQPV  VRPNYLTTAE  DRTSAREIVR  LGYKIMLSRS420
MQSRLSLPLG  ITDNTIRSDN  LLDKWIQSQY  SSTYHFCCSC  RMAAHTVVQR  EERCENLLQI480
EKEAENVYRS  GVGSDESVKD  GLEEVRENLD  IPERAQAKSR  PDGIVEDIAA  EDEDEDNDNE540
LVEGMESGDE  GEEEGDDEEE  DNVAETSRKL  CLRPTYPSLP  LPSFLSSFMP  AFHHLETPWK600
HVSSMECRHV  IQPNIASSLR  ARSSRTSSLD  PSPQSQSTSP  CDSDLETRRP  QLAHGMVY658

Predicted 3D structure by AlphaFold2 with pLDDT = 74.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEPPYTHIVV  GAGSAGCVVA  ARIAENPSLN  VLLLEAGPEP  EISTGSQNIR  RVPMKGQSET60
FDDRIDWNIE  VGFPDGGSMH  VAQAKVVGGG  SSINGGTALR  NAVKDCEEWV  LLGNDAWGWD120
SVEPVYDFLE  KDDLRPTKGF  HPLVRTKIEG  SGLIQQAFVA  GAIEAGLPWV  ADLNATGAEG180
TGASPVCRNG  ERRISAANTF  IDPIRGRRNF  RIQSNAFVDR  VLFSDRRATG  VKLVDGSQIS240
ASCEVILAAS  ALFSPAILQR  SGVGPSALLE  SLAIPVLQDL  PVGHNLSDHP  CIPVVARPKP300
DAYLESDFSL  QMQARWSSTM  NQKAIDLQMV  CFSYLFVAPG  APQPGASSRP  QRSLGGSETG360
HVAGIGCNLN  KPTSHGSVQI  GSKDPLQQPV  VRPNYLTTAE  DRTSAREIVR  LGYKIMLSRS420
MQSRLSLPLG  ITDNTIRSDN  LLDKWIQSQY  SSTYHFCCSC  RMAAHTVVQR  EERCENLLQI480
EKEAENVYRS  GVGSDESVKD  GLEEVRENLD  IPERAQAKSR  PDGIVEDIAA  EDEDEDNDNE540
LVEGMESGDE  GEEEGDDEEE  DNVAETSRKL  CLRPTYPSLP  LPSFLSSFMP  AFHHLETPWK600
HVSSMECRHV  IQPNIASSLR  ARSSRTSSLD  PSPQSQSTSP  CDSDLETRRP  QLAHGMVY658

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(5-468)

MEPPYTHIVV  GAGSAGCVVA  ARIAENPSLN  VLLLEAGPEP  EISTGSQNIR  RVPMKGQSET60
FDDRIDWNIE  VGFPDGGSMH  VAQAKVVGGG  SSINGGTALR  NAVKDCEEWV  LLGNDAWGWD120
SVEPVYDFLE  KDDLRPTKGF  HPLVRTKIEG  SGLIQQAFVA  GAIEAGLPWV  ADLNATGAEG180
TGASPVCRNG  ERRISAANTF  IDPIRGRRNF  RIQSNAFVDR  VLFSDRRATG  VKLVDGSQIS240
ASCEVILAAS  ALFSPAILQR  SGVGPSALLE  SLAIPVLQDL  PVGHNLSDHP  CIPVVARPKP300
DAYLESDFSL  QMQARWSSTM  NQKAIDLQMV  CFSYLFVAPG  APQPGASSRP  QRSLGGSETG360
HVAGIGCNLN  KPTSHGSVQI  GSKDPLQQPV  VRPNYLTTAE  DRTSAREIVR  LGYKIMLSRS420
MQSRLSLPLG  ITDNTIRSDN  LLDKWIQSQY  SSTYHFCCSC  RMAAHTVVQR  EERCENLLQI480
EKEAENVYRS  GVGSDESVKD  GLEEVRENLD  IPERAQAKSR  PDGIVEDIAA  EDEDEDNDNE540
LVEGMESGDE  GEEEGDDEEE  DNVAETSRKL  CLRPTYPSLP  LPSFLSSFMP  AFHHLETPWK600
HVSSMECRHV  IQPNIASSLR  ARSSRTSSLD  PSPQSQSTSP  CDSDLETRRP  QLAHGMVY658

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help