CAZyme3D

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Entry ID

Information for CAZyme ID: SMY20223.1

Basic Information

GenBank IDSMY20223.1
FamilyGT64
Sequence Length323
UniProt IDA0A1Y6L6V6(100,100)Download
Average pLDDT?83.91
CAZy50 ID145480
CAZy50 RepYes, SMY20223.1
Structure ClusterSC_GT64_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1276529
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderMycosphaerellales
FamilyMycosphaerellaceae
GenusZymoseptoria
SpeciesZymoseptoria tritici

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARDKRLIIG  GTLLVLILTF  TLIAQLADES  QLKPLSQLTR  FYGGSGSAHE  PIGPSDGLES60
VLGNITPAEE  DGFTLIAPSW  KRLNTLPDWI  KHYASGDIPS  LRRMIIIWPK  VQGDAPTSLL120
ENVTQSNYPI  PVIIDQREVN  TLNGRFLKID  AIKTNSVLAM  DDDMLYDPKD  VEFGYQVWRE180
FGQRERMSGF  IARATNKDNT  AYNIGGLKSY  SMILTKSAWF  HTDWMHAYWS  QDERMTRLRK240
YVDDHMNCED  ILLAFIHAHH  TRKSPLYVKP  YKMVDTGMKD  GISAAGDHLK  HRAACVSKFA300
EEFGQDTLVS  SDAVFQRMLD  NYG323

Predicted 3D structure by AlphaFold2 with pLDDT = 83.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MARDKRLIIG  GTLLVLILTF  TLIAQLADES  QLKPLSQLTR  FYGGSGSAHE  PIGPSDGLES60
VLGNITPAEE  DGFTLIAPSW  KRLNTLPDWI  KHYASGDIPS  LRRMIIIWPK  VQGDAPTSLL120
ENVTQSNYPI  PVIIDQREVN  TLNGRFLKID  AIKTNSVLAM  DDDMLYDPKD  VEFGYQVWRE180
FGQRERMSGF  IARATNKDNT  AYNIGGLKSY  SMILTKSAWF  HTDWMHAYWS  QDERMTRLRK240
YVDDHMNCED  ILLAFIHAHH  TRKSPLYVKP  YKMVDTGMKD  GISAAGDHLK  HRAACVSKFA300
EEFGQDTLVS  SDAVFQRMLD  NYG323

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT64(73-314)

MARDKRLIIG  GTLLVLILTF  TLIAQLADES  QLKPLSQLTR  FYGGSGSAHE  PIGPSDGLES60
VLGNITPAEE  DGFTLIAPSW  KRLNTLPDWI  KHYASGDIPS  LRRMIIIWPK  VQGDAPTSLL120
ENVTQSNYPI  PVIIDQREVN  TLNGRFLKID  AIKTNSVLAM  DDDMLYDPKD  VEFGYQVWRE180
FGQRERMSGF  IARATNKDNT  AYNIGGLKSY  SMILTKSAWF  HTDWMHAYWS  QDERMTRLRK240
YVDDHMNCED  ILLAFIHAHH  TRKSPLYVKP  YKMVDTGMKD  GISAAGDHLK  HRAACVSKFA300
EEFGQDTLVS  SDAVFQRMLD  NYG323

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help