Information for CAZyme ID: SMH72320.1
Basic Information
GenBank ID | SMH72320.1 |
Family | GH0 |
Sequence Length | 759 |
UniProt ID | A0A2H1FHS0(100,100)![]() |
Average pLDDT? | 93.27 |
CAZy50 ID | 31705 |
CAZy50 Rep | Yes, SMH72320.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1903276 |
Kingdom | Archaea |
Phylum | Nitrososphaerota |
Class | |
Order | |
Family | |
Genus | Candidatus Nitrosotalea |
Species | Candidatus Nitrosotalea okcheonensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSKLYLYSIF HGNLNYSSIP PESYDEIIDS CYWPILDILK DYKFKTGIEF PIATLEKIED | 60 |
IDPLFIEEFR KAISNKKCEI ICSGKEQVVF PLVPEDVNQV NISTGKDEME RLFSIQCNTA | 120 |
YINEQLFSSG LVPIYLDAKI KNIITIHEWA NKFSDFHEDE KFLPKKIGSK NDDLAIIWNS | 180 |
YIAYQKFQRY VNGEIEKEEY LEYILKHKKK ADSCFPLYGS DMEIFGYKNP VLGLKGDGKE | 240 |
IQRFKLILDE IEKKSDLEFI LPSQVIEKFP PRDRIKMNSA KFAILGKKQD KFIVTRWATC | 300 |
GRDNSNSNTI CYNLLKKIRI LQGMQDDKNN NLYISKLIDC WASDFRTHTT ETKYLHFNDI | 360 |
SRSLSKDVDR EIFSWNDKIS LEKSSDLILF NPNETDWDKI PFELRLHFRP RKMKGKFEII | 420 |
IDGKPISSQI EDAKYYKDGS LRSAVVVFEP SIRKKTIATI TIKDTGKKII SKSIQTDSIK | 480 |
TPTVELSILK RKGGSISDLI FPKISKLPLI GFLEHGTFSD TKFSADFYSG HVITFDRNGN | 540 |
KFTDLVNVEA IAEEGNFPIR KRLVCNMELP FGHLTKIYYT YQKLARLDIR YIFNFKEFRP | 600 |
ASFRVGMLTA KPNSFDKKSL NYATHNGGRL ESFTLDKESI TQDESSDPRL TNQGCLGSTE | 660 |
GTLDLGDKNI GITMFSDKSL WYSVPMINYH NVGKSFFYRI SNSVSELDDT TMTWWKGRKE | 720 |
ISFSLLGREK SPENNLKTTK MMFLGLVCFT RNPDIKVIK | 759 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.27 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSKLYLYSIF HGNLNYSSIP PESYDEIIDS CYWPILDILK DYKFKTGIEF PIATLEKIED | 60 |
IDPLFIEEFR KAISNKKCEI ICSGKEQVVF PLVPEDVNQV NISTGKDEME RLFSIQCNTA | 120 |
YINEQLFSSG LVPIYLDAKI KNIITIHEWA NKFSDFHEDE KFLPKKIGSK NDDLAIIWNS | 180 |
YIAYQKFQRY VNGEIEKEEY LEYILKHKKK ADSCFPLYGS DMEIFGYKNP VLGLKGDGKE | 240 |
IQRFKLILDE IEKKSDLEFI LPSQVIEKFP PRDRIKMNSA KFAILGKKQD KFIVTRWATC | 300 |
GRDNSNSNTI CYNLLKKIRI LQGMQDDKNN NLYISKLIDC WASDFRTHTT ETKYLHFNDI | 360 |
SRSLSKDVDR EIFSWNDKIS LEKSSDLILF NPNETDWDKI PFELRLHFRP RKMKGKFEII | 420 |
IDGKPISSQI EDAKYYKDGS LRSAVVVFEP SIRKKTIATI TIKDTGKKII SKSIQTDSIK | 480 |
TPTVELSILK RKGGSISDLI FPKISKLPLI GFLEHGTFSD TKFSADFYSG HVITFDRNGN | 540 |
KFTDLVNVEA IAEEGNFPIR KRLVCNMELP FGHLTKIYYT YQKLARLDIR YIFNFKEFRP | 600 |
ASFRVGMLTA KPNSFDKKSL NYATHNGGRL ESFTLDKESI TQDESSDPRL TNQGCLGSTE | 660 |
GTLDLGDKNI GITMFSDKSL WYSVPMINYH NVGKSFFYRI SNSVSELDDT TMTWWKGRKE | 720 |
ISFSLLGREK SPENNLKTTK MMFLGLVCFT RNPDIKVIK | 759 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.