CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: SMH72320.1

Basic Information

GenBank IDSMH72320.1
FamilyGH0
Sequence Length759
UniProt IDA0A2H1FHS0(100,100)Download
Average pLDDT?93.27
CAZy50 ID31705
CAZy50 RepYes, SMH72320.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1903276
KingdomArchaea
PhylumNitrososphaerota
Class
Order
Family
GenusCandidatus Nitrosotalea
SpeciesCandidatus Nitrosotalea okcheonensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKLYLYSIF  HGNLNYSSIP  PESYDEIIDS  CYWPILDILK  DYKFKTGIEF  PIATLEKIED60
IDPLFIEEFR  KAISNKKCEI  ICSGKEQVVF  PLVPEDVNQV  NISTGKDEME  RLFSIQCNTA120
YINEQLFSSG  LVPIYLDAKI  KNIITIHEWA  NKFSDFHEDE  KFLPKKIGSK  NDDLAIIWNS180
YIAYQKFQRY  VNGEIEKEEY  LEYILKHKKK  ADSCFPLYGS  DMEIFGYKNP  VLGLKGDGKE240
IQRFKLILDE  IEKKSDLEFI  LPSQVIEKFP  PRDRIKMNSA  KFAILGKKQD  KFIVTRWATC300
GRDNSNSNTI  CYNLLKKIRI  LQGMQDDKNN  NLYISKLIDC  WASDFRTHTT  ETKYLHFNDI360
SRSLSKDVDR  EIFSWNDKIS  LEKSSDLILF  NPNETDWDKI  PFELRLHFRP  RKMKGKFEII420
IDGKPISSQI  EDAKYYKDGS  LRSAVVVFEP  SIRKKTIATI  TIKDTGKKII  SKSIQTDSIK480
TPTVELSILK  RKGGSISDLI  FPKISKLPLI  GFLEHGTFSD  TKFSADFYSG  HVITFDRNGN540
KFTDLVNVEA  IAEEGNFPIR  KRLVCNMELP  FGHLTKIYYT  YQKLARLDIR  YIFNFKEFRP600
ASFRVGMLTA  KPNSFDKKSL  NYATHNGGRL  ESFTLDKESI  TQDESSDPRL  TNQGCLGSTE660
GTLDLGDKNI  GITMFSDKSL  WYSVPMINYH  NVGKSFFYRI  SNSVSELDDT  TMTWWKGRKE720
ISFSLLGREK  SPENNLKTTK  MMFLGLVCFT  RNPDIKVIK759

Predicted 3D structure by AlphaFold2 with pLDDT = 93.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSKLYLYSIF  HGNLNYSSIP  PESYDEIIDS  CYWPILDILK  DYKFKTGIEF  PIATLEKIED60
IDPLFIEEFR  KAISNKKCEI  ICSGKEQVVF  PLVPEDVNQV  NISTGKDEME  RLFSIQCNTA120
YINEQLFSSG  LVPIYLDAKI  KNIITIHEWA  NKFSDFHEDE  KFLPKKIGSK  NDDLAIIWNS180
YIAYQKFQRY  VNGEIEKEEY  LEYILKHKKK  ADSCFPLYGS  DMEIFGYKNP  VLGLKGDGKE240
IQRFKLILDE  IEKKSDLEFI  LPSQVIEKFP  PRDRIKMNSA  KFAILGKKQD  KFIVTRWATC300
GRDNSNSNTI  CYNLLKKIRI  LQGMQDDKNN  NLYISKLIDC  WASDFRTHTT  ETKYLHFNDI360
SRSLSKDVDR  EIFSWNDKIS  LEKSSDLILF  NPNETDWDKI  PFELRLHFRP  RKMKGKFEII420
IDGKPISSQI  EDAKYYKDGS  LRSAVVVFEP  SIRKKTIATI  TIKDTGKKII  SKSIQTDSIK480
TPTVELSILK  RKGGSISDLI  FPKISKLPLI  GFLEHGTFSD  TKFSADFYSG  HVITFDRNGN540
KFTDLVNVEA  IAEEGNFPIR  KRLVCNMELP  FGHLTKIYYT  YQKLARLDIR  YIFNFKEFRP600
ASFRVGMLTA  KPNSFDKKSL  NYATHNGGRL  ESFTLDKESI  TQDESSDPRL  TNQGCLGSTE660
GTLDLGDKNI  GITMFSDKSL  WYSVPMINYH  NVGKSFFYRI  SNSVSELDDT  TMTWWKGRKE720
ISFSLLGREK  SPENNLKTTK  MMFLGLVCFT  RNPDIKVIK759

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH57(13-283)

MSKLYLYSIF  HGNLNYSSIP  PESYDEIIDS  CYWPILDILK  DYKFKTGIEF  PIATLEKIED60
IDPLFIEEFR  KAISNKKCEI  ICSGKEQVVF  PLVPEDVNQV  NISTGKDEME  RLFSIQCNTA120
YINEQLFSSG  LVPIYLDAKI  KNIITIHEWA  NKFSDFHEDE  KFLPKKIGSK  NDDLAIIWNS180
YIAYQKFQRY  VNGEIEKEEY  LEYILKHKKK  ADSCFPLYGS  DMEIFGYKNP  VLGLKGDGKE240
IQRFKLILDE  IEKKSDLEFI  LPSQVIEKFP  PRDRIKMNSA  KFAILGKKQD  KFIVTRWATC300
GRDNSNSNTI  CYNLLKKIRI  LQGMQDDKNN  NLYISKLIDC  WASDFRTHTT  ETKYLHFNDI360
SRSLSKDVDR  EIFSWNDKIS  LEKSSDLILF  NPNETDWDKI  PFELRLHFRP  RKMKGKFEII420
IDGKPISSQI  EDAKYYKDGS  LRSAVVVFEP  SIRKKTIATI  TIKDTGKKII  SKSIQTDSIK480
TPTVELSILK  RKGGSISDLI  FPKISKLPLI  GFLEHGTFSD  TKFSADFYSG  HVITFDRNGN540
KFTDLVNVEA  IAEEGNFPIR  KRLVCNMELP  FGHLTKIYYT  YQKLARLDIR  YIFNFKEFRP600
ASFRVGMLTA  KPNSFDKKSL  NYATHNGGRL  ESFTLDKESI  TQDESSDPRL  TNQGCLGSTE660
GTLDLGDKNI  GITMFSDKSL  WYSVPMINYH  NVGKSFFYRI  SNSVSELDDT  TMTWWKGRKE720
ISFSLLGREK  SPENNLKTTK  MMFLGLVCFT  RNPDIKVIK759

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help