CAZyme3D

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Entry ID

Information for CAZyme ID: SMH72296.1

Basic Information

GenBank IDSMH72296.1
FamilyGT4
Sequence Length403
UniProt IDA0A2H1FHQ1(100,100)Download
Average pLDDT?87.37
CAZy50 ID97338
CAZy50 RepYes, SMH72296.1
Structure ClusterSC_GT4_clus139
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1903276
KingdomArchaea
PhylumNitrososphaerota
Class
Order
Family
GenusCandidatus Nitrosotalea
SpeciesCandidatus Nitrosotalea okcheonensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIVFLYNES  EVEGKGNIDL  FSIQRKLKKL  NHEIVIIVRK  DSSNNHQDNV  HAILPSPMKA60
FFILPLIIIK  LSTIIKKENP  DVIVVEGGWY  IPLLISMANI  TKRKPIIFVF  RGLVLETLVA120
FHAKSFLIKT  VARLFIKINH  AIYKKSKFLI  GTNPSLCKFY  EEKLRKKVTL  IGTHSIDFEI180
FKPLDAISSK  QIREQYGIDK  NKISILYSGA  IEEWHISYLV  DLIDNVVQLD  KEGHMVQIII240
MGWGSCRDKL  LNLIKKKIEN  GVKKDVILAM  PWLEHQIVPK  IIASCDICVD  PFLRPHPMNY300
APAGKLMEYM  ACGKCIITTK  GYSNEELVTD  KKSGFIVDGT  KTNLYLTLKN  ILIDKDNIKG360
MGQIARETIV  KLYSSTNKIE  DFEEYLKKAS  MTNHPTKKIT  DKK403

Predicted 3D structure by AlphaFold2 with pLDDT = 87.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKIVFLYNES  EVEGKGNIDL  FSIQRKLKKL  NHEIVIIVRK  DSSNNHQDNV  HAILPSPMKA60
FFILPLIIIK  LSTIIKKENP  DVIVVEGGWY  IPLLISMANI  TKRKPIIFVF  RGLVLETLVA120
FHAKSFLIKT  VARLFIKINH  AIYKKSKFLI  GTNPSLCKFY  EEKLRKKVTL  IGTHSIDFEI180
FKPLDAISSK  QIREQYGIDK  NKISILYSGA  IEEWHISYLV  DLIDNVVQLD  KEGHMVQIII240
MGWGSCRDKL  LNLIKKKIEN  GVKKDVILAM  PWLEHQIVPK  IIASCDICVD  PFLRPHPMNY300
APAGKLMEYM  ACGKCIITTK  GYSNEELVTD  KKSGFIVDGT  KTNLYLTLKN  ILIDKDNIKG360
MGQIARETIV  KLYSSTNKIE  DFEEYLKKAS  MTNHPTKKIT  DKK403

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(202-357)

MKIVFLYNES  EVEGKGNIDL  FSIQRKLKKL  NHEIVIIVRK  DSSNNHQDNV  HAILPSPMKA60
FFILPLIIIK  LSTIIKKENP  DVIVVEGGWY  IPLLISMANI  TKRKPIIFVF  RGLVLETLVA120
FHAKSFLIKT  VARLFIKINH  AIYKKSKFLI  GTNPSLCKFY  EEKLRKKVTL  IGTHSIDFEI180
FKPLDAISSK  QIREQYGIDK  NKISILYSGA  IEEWHISYLV  DLIDNVVQLD  KEGHMVQIII240
MGWGSCRDKL  LNLIKKKIEN  GVKKDVILAM  PWLEHQIVPK  IIASCDICVD  PFLRPHPMNY300
APAGKLMEYM  ACGKCIITTK  GYSNEELVTD  KKSGFIVDGT  KTNLYLTLKN  ILIDKDNIKG360
MGQIARETIV  KLYSSTNKIE  DFEEYLKKAS  MTNHPTKKIT  DKK403

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help