Information for CAZyme ID: SHM03638.1
Basic Information
GenBank ID | SHM03638.1 |
Family | GH17, GT2 |
Sequence Length | 891 |
UniProt ID | A0A1M7FIN5(100,100)![]() |
Average pLDDT? | 87.58 |
CAZy50 ID | 15524 |
CAZy50 Rep | No, BAT60649.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 722472 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Hyphomicrobiales |
Family | Nitrobacteraceae |
Genus | Bradyrhizobium |
Species | Bradyrhizobium lablabi |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRAVVAVLLC VAAVHAALWG VFREKQEAPN FKGILPSVSY APFERGHIVA DSIADSEKVR | 60 |
ADLKKLSTLT RAVRLYSSTE GSELVPPIAA EFGLKVTVGA WIDKNADRNE REILSAIELA | 120 |
KHNGNVNGVV VGNETLYRGE QKIDDLIALI QRVKGSVNVP VTTGEIWNIW LEHPELASSV | 180 |
DFIAAHILPY WEGFSDKQAV DQALIIYQKL RDAFPGKRIV VAEFGWPSAG YNLQSATPGP | 240 |
FQQAVTLRNF VSRAEAIGME YNIVEAIDQP WKYFEGGVGP YWGILNAARE PKFAWSGPVV | 300 |
DEAYWKLATL ALLVGLLMSL PILRLPDATV MQSLILATAA NGIGAWAATV FSYWTGHYFV | 360 |
LGSAFALTLG LILLVPLVLI AMARIEEIAA VAFGRKPLRL IIKGAAVAPA TMGETVTFPK | 420 |
VSIHVPAYFE PPEMLKQTLD AVSRLDYPNF ECVVIINNTP DPEFWQPIQD HCRALGERFK | 480 |
FINAEKVQGF KAGALRIAMD RTAVDAEIIG IIDADYVVQP DWLKDLVPVF ADARVGLVQA | 540 |
PQDHRDGDRS LMHYIMNGEY AGFFDIGMVQ RNEANAIIVH GTMCLIRRAA MDMAGGWAGD | 600 |
TICEDTDLGL AVIEHGWLTH YTNHRYGHGL LPDTYEAFKK QRHRWAYGGF QIVKKHWRRF | 660 |
LPGASRLTPD QRREFTLGWL NWLGAESLGV LVAILNLIWV PIVAFADIAI PDKILTLPII | 720 |
ASFVVSLLHF VTMYRLRVPV KWGQMLGAMI AAMSVQWTVS RAVANGLITE HLPFTRTSKG | 780 |
GLSRMSIEFQ AFWEAVIGVL LLVGAAVLVV TNNFKQVLEI YVFAGVLVLQ SLPFLSAVAI | 840 |
AILENSRLNE FSFWRNSAIR TAELIGLRPV ALPEVVRNSQ PVASEIHPEA S | 891 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.58 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH17(49-157)+GT2(419-648)
MRAVVAVLLC VAAVHAALWG VFREKQEAPN FKGILPSVSY APFERGHIVA DSIADSEKVR | 60 |
ADLKKLSTLT RAVRLYSSTE GSELVPPIAA EFGLKVTVGA WIDKNADRNE REILSAIELA | 120 |
KHNGNVNGVV VGNETLYRGE QKIDDLIALI QRVKGSVNVP VTTGEIWNIW LEHPELASSV | 180 |
DFIAAHILPY WEGFSDKQAV DQALIIYQKL RDAFPGKRIV VAEFGWPSAG YNLQSATPGP | 240 |
FQQAVTLRNF VSRAEAIGME YNIVEAIDQP WKYFEGGVGP YWGILNAARE PKFAWSGPVV | 300 |
DEAYWKLATL ALLVGLLMSL PILRLPDATV MQSLILATAA NGIGAWAATV FSYWTGHYFV | 360 |
LGSAFALTLG LILLVPLVLI AMARIEEIAA VAFGRKPLRL IIKGAAVAPA TMGETVTFPK | 420 |
VSIHVPAYFE PPEMLKQTLD AVSRLDYPNF ECVVIINNTP DPEFWQPIQD HCRALGERFK | 480 |
FINAEKVQGF KAGALRIAMD RTAVDAEIIG IIDADYVVQP DWLKDLVPVF ADARVGLVQA | 540 |
PQDHRDGDRS LMHYIMNGEY AGFFDIGMVQ RNEANAIIVH GTMCLIRRAA MDMAGGWAGD | 600 |
TICEDTDLGL AVIEHGWLTH YTNHRYGHGL LPDTYEAFKK QRHRWAYGGF QIVKKHWRRF | 660 |
LPGASRLTPD QRREFTLGWL NWLGAESLGV LVAILNLIWV PIVAFADIAI PDKILTLPII | 720 |
ASFVVSLLHF VTMYRLRVPV KWGQMLGAMI AAMSVQWTVS RAVANGLITE HLPFTRTSKG | 780 |
GLSRMSIEFQ AFWEAVIGVL LLVGAAVLVV TNNFKQVLEI YVFAGVLVLQ SLPFLSAVAI | 840 |
AILENSRLNE FSFWRNSAIR TAELIGLRPV ALPEVVRNSQ PVASEIHPEA S | 891 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.