CAZyme3D

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Entry ID

Information for CAZyme ID: SHM03638.1

Basic Information

GenBank IDSHM03638.1
FamilyGH17, GT2
Sequence Length891
UniProt IDA0A1M7FIN5(100,100)Download
Average pLDDT?87.58
CAZy50 ID15524
CAZy50 RepNo, BAT60649.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID722472
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium lablabi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRAVVAVLLC  VAAVHAALWG  VFREKQEAPN  FKGILPSVSY  APFERGHIVA  DSIADSEKVR60
ADLKKLSTLT  RAVRLYSSTE  GSELVPPIAA  EFGLKVTVGA  WIDKNADRNE  REILSAIELA120
KHNGNVNGVV  VGNETLYRGE  QKIDDLIALI  QRVKGSVNVP  VTTGEIWNIW  LEHPELASSV180
DFIAAHILPY  WEGFSDKQAV  DQALIIYQKL  RDAFPGKRIV  VAEFGWPSAG  YNLQSATPGP240
FQQAVTLRNF  VSRAEAIGME  YNIVEAIDQP  WKYFEGGVGP  YWGILNAARE  PKFAWSGPVV300
DEAYWKLATL  ALLVGLLMSL  PILRLPDATV  MQSLILATAA  NGIGAWAATV  FSYWTGHYFV360
LGSAFALTLG  LILLVPLVLI  AMARIEEIAA  VAFGRKPLRL  IIKGAAVAPA  TMGETVTFPK420
VSIHVPAYFE  PPEMLKQTLD  AVSRLDYPNF  ECVVIINNTP  DPEFWQPIQD  HCRALGERFK480
FINAEKVQGF  KAGALRIAMD  RTAVDAEIIG  IIDADYVVQP  DWLKDLVPVF  ADARVGLVQA540
PQDHRDGDRS  LMHYIMNGEY  AGFFDIGMVQ  RNEANAIIVH  GTMCLIRRAA  MDMAGGWAGD600
TICEDTDLGL  AVIEHGWLTH  YTNHRYGHGL  LPDTYEAFKK  QRHRWAYGGF  QIVKKHWRRF660
LPGASRLTPD  QRREFTLGWL  NWLGAESLGV  LVAILNLIWV  PIVAFADIAI  PDKILTLPII720
ASFVVSLLHF  VTMYRLRVPV  KWGQMLGAMI  AAMSVQWTVS  RAVANGLITE  HLPFTRTSKG780
GLSRMSIEFQ  AFWEAVIGVL  LLVGAAVLVV  TNNFKQVLEI  YVFAGVLVLQ  SLPFLSAVAI840
AILENSRLNE  FSFWRNSAIR  TAELIGLRPV  ALPEVVRNSQ  PVASEIHPEA  S891

Predicted 3D structure by AlphaFold2 with pLDDT = 87.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(49-157)+GT2(419-648)

MRAVVAVLLC  VAAVHAALWG  VFREKQEAPN  FKGILPSVSY  APFERGHIVA  DSIADSEKVR60
ADLKKLSTLT  RAVRLYSSTE  GSELVPPIAA  EFGLKVTVGA  WIDKNADRNE  REILSAIELA120
KHNGNVNGVV  VGNETLYRGE  QKIDDLIALI  QRVKGSVNVP  VTTGEIWNIW  LEHPELASSV180
DFIAAHILPY  WEGFSDKQAV  DQALIIYQKL  RDAFPGKRIV  VAEFGWPSAG  YNLQSATPGP240
FQQAVTLRNF  VSRAEAIGME  YNIVEAIDQP  WKYFEGGVGP  YWGILNAARE  PKFAWSGPVV300
DEAYWKLATL  ALLVGLLMSL  PILRLPDATV  MQSLILATAA  NGIGAWAATV  FSYWTGHYFV360
LGSAFALTLG  LILLVPLVLI  AMARIEEIAA  VAFGRKPLRL  IIKGAAVAPA  TMGETVTFPK420
VSIHVPAYFE  PPEMLKQTLD  AVSRLDYPNF  ECVVIINNTP  DPEFWQPIQD  HCRALGERFK480
FINAEKVQGF  KAGALRIAMD  RTAVDAEIIG  IIDADYVVQP  DWLKDLVPVF  ADARVGLVQA540
PQDHRDGDRS  LMHYIMNGEY  AGFFDIGMVQ  RNEANAIIVH  GTMCLIRRAA  MDMAGGWAGD600
TICEDTDLGL  AVIEHGWLTH  YTNHRYGHGL  LPDTYEAFKK  QRHRWAYGGF  QIVKKHWRRF660
LPGASRLTPD  QRREFTLGWL  NWLGAESLGV  LVAILNLIWV  PIVAFADIAI  PDKILTLPII720
ASFVVSLLHF  VTMYRLRVPV  KWGQMLGAMI  AAMSVQWTVS  RAVANGLITE  HLPFTRTSKG780
GLSRMSIEFQ  AFWEAVIGVL  LLVGAAVLVV  TNNFKQVLEI  YVFAGVLVLQ  SLPFLSAVAI840
AILENSRLNE  FSFWRNSAIR  TAELIGLRPV  ALPEVVRNSQ  PVASEIHPEA  S891

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help